miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 5' -49.6 NC_003521.1 + 46807 0.69 0.991052
Target:  5'- ------uGGuCUggaUGACGCCGCcGCCGGu -3'
miRNA:   3'- auauaauUC-GAa--ACUGCGGCG-CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 49466 0.67 0.998909
Target:  5'- -----aAAGaCgaUGACGCCGUGCCa- -3'
miRNA:   3'- auauaaUUC-GaaACUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 55537 0.68 0.996826
Target:  5'- ------cAGCga--GCGCCGCGCCGa -3'
miRNA:   3'- auauaauUCGaaacUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 56463 0.66 0.999692
Target:  5'- -----cGAGa---GGCGCCGCGCCa- -3'
miRNA:   3'- auauaaUUCgaaaCUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 57833 0.66 0.999519
Target:  5'- -----gAAGCUcggccggUGACGCCGaaCGCCGu -3'
miRNA:   3'- auauaaUUCGAa------ACUGCGGC--GCGGCc -5'
14272 5' -49.6 NC_003521.1 + 59428 0.66 0.999519
Target:  5'- -------cGCgacagcGGCGCCGCcGCCGGc -3'
miRNA:   3'- auauaauuCGaaa---CUGCGGCG-CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 61693 0.68 0.99731
Target:  5'- -----gGAGCgucaggggUUGACGCUGUGCCu- -3'
miRNA:   3'- auauaaUUCGa-------AACUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 62109 0.68 0.996826
Target:  5'- -------cGCUUcGGCGcCCGCGCgGGg -3'
miRNA:   3'- auauaauuCGAAaCUGC-GGCGCGgCC- -5'
14272 5' -49.6 NC_003521.1 + 62214 0.69 0.993206
Target:  5'- -----gAGGCguugGACGCCGUGCUGc -3'
miRNA:   3'- auauaaUUCGaaa-CUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 62632 0.66 0.999614
Target:  5'- -----cGAGCUUcGGCGCCGC-CCu- -3'
miRNA:   3'- auauaaUUCGAAaCUGCGGCGcGGcc -5'
14272 5' -49.6 NC_003521.1 + 63960 0.7 0.986851
Target:  5'- -----gGAGCUgcUGGCGCgGCGCCa- -3'
miRNA:   3'- auauaaUUCGAa-ACUGCGgCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 64527 0.67 0.998096
Target:  5'- cAUGUUGcGCgacGACGCCGaCGCCc- -3'
miRNA:   3'- aUAUAAUuCGaaaCUGCGGC-GCGGcc -5'
14272 5' -49.6 NC_003521.1 + 65971 0.67 0.998679
Target:  5'- aAUGgaauGGCUggacGugGCCaCGCCGGa -3'
miRNA:   3'- aUAUaau-UCGAaa--CugCGGcGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 68384 0.68 0.996271
Target:  5'- -----aGAGCgaggugGACGCCGUgagauGCCGGc -3'
miRNA:   3'- auauaaUUCGaaa---CUGCGGCG-----CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 70706 0.76 0.858701
Target:  5'- -----cAAGCUgcgucGGCGCCuGCGCCGGa -3'
miRNA:   3'- auauaaUUCGAaa---CUGCGG-CGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 72286 0.66 0.999614
Target:  5'- ------cAGCgccGcCGCCGCGCUGGc -3'
miRNA:   3'- auauaauUCGaaaCuGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 73335 0.66 0.999509
Target:  5'- -cUGUUGuGCUUcaagUGcaacuacGCGCCGCGCaCGGc -3'
miRNA:   3'- auAUAAUuCGAA----AC-------UGCGGCGCG-GCC- -5'
14272 5' -49.6 NC_003521.1 + 75984 0.66 0.999519
Target:  5'- -----gAAGUc-UGGCGCCGgcCGCCGGu -3'
miRNA:   3'- auauaaUUCGaaACUGCGGC--GCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 85212 0.74 0.92565
Target:  5'- -------uGCgucacccGGCGCCGCGCCGGa -3'
miRNA:   3'- auauaauuCGaaa----CUGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 85760 0.67 0.999103
Target:  5'- ----aUGAGCgagGugGCCaGCGCCu- -3'
miRNA:   3'- auauaAUUCGaaaCugCGG-CGCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.