miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 5' -49.6 NC_003521.1 + 2604 0.69 0.994115
Target:  5'- -------cGCUc-GACGCCGUGCCGa -3'
miRNA:   3'- auauaauuCGAaaCUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 11922 0.74 0.914187
Target:  5'- uUGUGUUAGcgccGCUUUGACGCCGUGUUu- -3'
miRNA:   3'- -AUAUAAUU----CGAAACUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 12672 0.68 0.997731
Target:  5'- -----cAAGUggUUGguGCGCCGCGaCCGGu -3'
miRNA:   3'- auauaaUUCGa-AAC--UGCGGCGC-GGCC- -5'
14272 5' -49.6 NC_003521.1 + 13917 0.69 0.992188
Target:  5'- -----gGGGCcgcgGAgGCCGCGCUGGc -3'
miRNA:   3'- auauaaUUCGaaa-CUgCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 14136 0.68 0.997731
Target:  5'- -----aGGGCUggcacgUGACGuuGCGCCu- -3'
miRNA:   3'- auauaaUUCGAa-----ACUGCggCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 14738 0.72 0.965097
Target:  5'- -cUGUUGGGCgugacgGGCcgGCCGCGgCCGGg -3'
miRNA:   3'- auAUAAUUCGaaa---CUG--CGGCGC-GGCC- -5'
14272 5' -49.6 NC_003521.1 + 17355 0.66 0.999519
Target:  5'- -----cGGGCcgUGACGCCgGCGCggCGGc -3'
miRNA:   3'- auauaaUUCGaaACUGCGG-CGCG--GCC- -5'
14272 5' -49.6 NC_003521.1 + 17403 1.11 0.014335
Target:  5'- cUAUAUUAAGCUUUGACGCCGCGCCGGg -3'
miRNA:   3'- -AUAUAAUUCGAAACUGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 18919 0.67 0.998909
Target:  5'- -----gAAGgg-UGGCGCCGCgcGCCGGc -3'
miRNA:   3'- auauaaUUCgaaACUGCGGCG--CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 19860 0.68 0.996502
Target:  5'- -----gGAGCUgcagcgcucccugcUGACgGCCGCGUCGGc -3'
miRNA:   3'- auauaaUUCGAa-------------ACUG-CGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 24616 0.66 0.999267
Target:  5'- cGUGUgccAGGag--GACcCCGCGCCGGu -3'
miRNA:   3'- aUAUAa--UUCgaaaCUGcGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 27247 0.66 0.999692
Target:  5'- ------cGGCUgcuacgUGGCGCUGCuGUCGGu -3'
miRNA:   3'- auauaauUCGAa-----ACUGCGGCG-CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 30226 0.67 0.998096
Target:  5'- ------cGGCcgUUGGCGUCGCGCUGc -3'
miRNA:   3'- auauaauUCGa-AACUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 31716 0.7 0.988392
Target:  5'- cAUGUgcgcguGCUggGACGCCGCgGCCa- -3'
miRNA:   3'- aUAUAauu---CGAaaCUGCGGCG-CGGcc -5'
14272 5' -49.6 NC_003521.1 + 32866 0.68 0.997692
Target:  5'- -----gAGGCcgaucggUUUGGCGcCCGCGCCGc -3'
miRNA:   3'- auauaaUUCG-------AAACUGC-GGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 34702 0.67 0.998096
Target:  5'- cGUcgUAGGCgaagacGGCGCCGUGCgCGu -3'
miRNA:   3'- aUAuaAUUCGaaa---CUGCGGCGCG-GCc -5'
14272 5' -49.6 NC_003521.1 + 38067 0.66 0.999405
Target:  5'- cUGUAcagGGGUUgugGugGCCGuCGCUGGc -3'
miRNA:   3'- -AUAUaa-UUCGAaa-CugCGGC-GCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 38469 0.67 0.99841
Target:  5'- ----cUGGGCUcUGGCGgUggGCGCCGGc -3'
miRNA:   3'- auauaAUUCGAaACUGCgG--CGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 39018 0.67 0.998909
Target:  5'- -----gGAGCg--GGCGCCGCcgaaggauuGCUGGg -3'
miRNA:   3'- auauaaUUCGaaaCUGCGGCG---------CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 44235 0.7 0.983302
Target:  5'- -----cAAGCUcUGcCGCCGUGCgCGGg -3'
miRNA:   3'- auauaaUUCGAaACuGCGGCGCG-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.