miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 5' -49.6 NC_003521.1 + 17403 1.11 0.014335
Target:  5'- cUAUAUUAAGCUUUGACGCCGCGCCGGg -3'
miRNA:   3'- -AUAUAAUUCGAAACUGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 197257 0.78 0.770858
Target:  5'- -----gGAGCggugcUUGACGCgGCGCCGGc -3'
miRNA:   3'- auauaaUUCGa----AACUGCGgCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 130758 0.77 0.789749
Target:  5'- -----cGGGCgcgaGCGCCGCGCCGGg -3'
miRNA:   3'- auauaaUUCGaaacUGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 70706 0.76 0.858701
Target:  5'- -----cAAGCUgcgucGGCGCCuGCGCCGGa -3'
miRNA:   3'- auauaaUUCGAaa---CUGCGG-CGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 102329 0.75 0.873959
Target:  5'- cGUcgUGcGCgugGGCGCCGaCGCCGGg -3'
miRNA:   3'- aUAuaAUuCGaaaCUGCGGC-GCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 11922 0.74 0.914187
Target:  5'- uUGUGUUAGcgccGCUUUGACGCCGUGUUu- -3'
miRNA:   3'- -AUAUAAUU----CGAAACUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 87923 0.74 0.92565
Target:  5'- ------uGGCUggc-CGCCGCGCCGGg -3'
miRNA:   3'- auauaauUCGAaacuGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 85212 0.74 0.92565
Target:  5'- -------uGCgucacccGGCGCCGCGCCGGa -3'
miRNA:   3'- auauaauuCGaaa----CUGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 166242 0.73 0.931009
Target:  5'- -------cGCgg-GACGCCGCGCCGc -3'
miRNA:   3'- auauaauuCGaaaCUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 116881 0.73 0.940982
Target:  5'- aGUGgcgcGGCUgcGGCGgCGCGCCGGc -3'
miRNA:   3'- aUAUaau-UCGAaaCUGCgGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 223460 0.73 0.940982
Target:  5'- -----cGAGuCUggGcCGCCGCGCCGGc -3'
miRNA:   3'- auauaaUUC-GAaaCuGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 216630 0.72 0.954104
Target:  5'- ----gUAGGCgggcGCGCCGaCGCCGGg -3'
miRNA:   3'- auauaAUUCGaaacUGCGGC-GCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 203402 0.72 0.954104
Target:  5'- -----gAGGCUc-GGCGCCGCGCCa- -3'
miRNA:   3'- auauaaUUCGAaaCUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 222111 0.72 0.957999
Target:  5'- ------cAGCgucucgaGGCGCUGCGCCGGg -3'
miRNA:   3'- auauaauUCGaaa----CUGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 224085 0.72 0.957999
Target:  5'- ------cGGCg--GGCGCgCGCGCCGGc -3'
miRNA:   3'- auauaauUCGaaaCUGCG-GCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 129578 0.72 0.957999
Target:  5'- ------uGGCUgcuccgccGCGCCGCGCCGGc -3'
miRNA:   3'- auauaauUCGAaac-----UGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 176861 0.72 0.965097
Target:  5'- ------uGGUUaUGGCGCCGCGCCa- -3'
miRNA:   3'- auauaauUCGAaACUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 141201 0.72 0.965097
Target:  5'- ------uGGCcgUGGCGCUGCGCCGc -3'
miRNA:   3'- auauaauUCGaaACUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 14738 0.72 0.965097
Target:  5'- -cUGUUGGGCgugacgGGCcgGCCGCGgCCGGg -3'
miRNA:   3'- auAUAAUUCGaaa---CUG--CGGCGC-GGCC- -5'
14272 5' -49.6 NC_003521.1 + 126067 0.72 0.96831
Target:  5'- cGUGUccAGCagcUGugGCCGCGCCa- -3'
miRNA:   3'- aUAUAauUCGaa-ACugCGGCGCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.