Results 1 - 20 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14272 | 5' | -49.6 | NC_003521.1 | + | 235285 | 0.66 | 0.999614 |
Target: 5'- ------uGGC---GGCgGCCGCGCCGGc -3' miRNA: 3'- auauaauUCGaaaCUG-CGGCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 235164 | 0.66 | 0.999405 |
Target: 5'- -----cGAGCgcgaUUGGCGUCGCGUCa- -3' miRNA: 3'- auauaaUUCGa---AACUGCGGCGCGGcc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 232820 | 0.68 | 0.996271 |
Target: 5'- -----gGAGCUacGGCGCUGCcCCGGu -3' miRNA: 3'- auauaaUUCGAaaCUGCGGCGcGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 227600 | 0.7 | 0.98979 |
Target: 5'- cAUGgcAGGCUUgGGCGCCG-GUCGGc -3' miRNA: 3'- aUAUaaUUCGAAaCUGCGGCgCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 226841 | 0.68 | 0.997731 |
Target: 5'- -------cGCcc-GcCGCCGCGCCGGg -3' miRNA: 3'- auauaauuCGaaaCuGCGGCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 225736 | 0.68 | 0.99564 |
Target: 5'- ----gUAGGCUguUUGAUG-CGCGCCGa -3' miRNA: 3'- auauaAUUCGA--AACUGCgGCGCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 224085 | 0.72 | 0.957999 |
Target: 5'- ------cGGCg--GGCGCgCGCGCCGGc -3' miRNA: 3'- auauaauUCGaaaCUGCG-GCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 223460 | 0.73 | 0.940982 |
Target: 5'- -----cGAGuCUggGcCGCCGCGCCGGc -3' miRNA: 3'- auauaaUUC-GAaaCuGCGGCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 222111 | 0.72 | 0.957999 |
Target: 5'- ------cAGCgucucgaGGCGCUGCGCCGGg -3' miRNA: 3'- auauaauUCGaaa----CUGCGGCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 221764 | 0.67 | 0.99841 |
Target: 5'- ------cAGCgucuGCGCCGCGCCGc -3' miRNA: 3'- auauaauUCGaaacUGCGGCGCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 216630 | 0.72 | 0.954104 |
Target: 5'- ----gUAGGCgggcGCGCCGaCGCCGGg -3' miRNA: 3'- auauaAUUCGaaacUGCGGC-GCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 214269 | 0.68 | 0.997731 |
Target: 5'- -------cGCccUGACGCCGuCGCUGGc -3' miRNA: 3'- auauaauuCGaaACUGCGGC-GCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 211954 | 0.69 | 0.994115 |
Target: 5'- ----gUGAGCUUgGGCgacucgaccguGCCGCGCCGc -3' miRNA: 3'- auauaAUUCGAAaCUG-----------CGGCGCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 211168 | 0.67 | 0.998821 |
Target: 5'- gGUGUUuuucggaGGCGCCGCGCuCGGu -3' miRNA: 3'- aUAUAAuucgaaaCUGCGGCGCG-GCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 211163 | 0.69 | 0.991052 |
Target: 5'- -----aAGGCUUUGAgaGCCaGCGcCCGGa -3' miRNA: 3'- auauaaUUCGAAACUg-CGG-CGC-GGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 210121 | 0.66 | 0.999405 |
Target: 5'- ----aUGAGCccgcGGCGCCGCGuuGu -3' miRNA: 3'- auauaAUUCGaaa-CUGCGGCGCggCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 209366 | 0.69 | 0.993206 |
Target: 5'- gAUGUaccuGGCUUcuaACGCCGUGCUGGc -3' miRNA: 3'- aUAUAau--UCGAAac-UGCGGCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 203402 | 0.72 | 0.954104 |
Target: 5'- -----gAGGCUc-GGCGCCGCGCCa- -3' miRNA: 3'- auauaaUUCGAaaCUGCGGCGCGGcc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 201239 | 0.66 | 0.999405 |
Target: 5'- -----aGGGCag-GAcCGCCGaCGCCGGc -3' miRNA: 3'- auauaaUUCGaaaCU-GCGGC-GCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 197384 | 0.66 | 0.999267 |
Target: 5'- -----gAGGCUcUGGCucGCCGC-CCGGg -3' miRNA: 3'- auauaaUUCGAaACUG--CGGCGcGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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