miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 5' -49.6 NC_003521.1 + 103309 0.66 0.999614
Target:  5'- -----gAAGCg--GACGCgGCGCUGc -3'
miRNA:   3'- auauaaUUCGaaaCUGCGgCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 17355 0.66 0.999519
Target:  5'- -----cGGGCcgUGACGCCgGCGCggCGGc -3'
miRNA:   3'- auauaaUUCGaaACUGCGG-CGCG--GCC- -5'
14272 5' -49.6 NC_003521.1 + 210121 0.66 0.999405
Target:  5'- ----aUGAGCccgcGGCGCCGCGuuGu -3'
miRNA:   3'- auauaAUUCGaaa-CUGCGGCGCggCc -5'
14272 5' -49.6 NC_003521.1 + 38067 0.66 0.999405
Target:  5'- cUGUAcagGGGUUgugGugGCCGuCGCUGGc -3'
miRNA:   3'- -AUAUaa-UUCGAaa-CugCGGC-GCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 197384 0.66 0.999267
Target:  5'- -----gAGGCUcUGGCucGCCGC-CCGGg -3'
miRNA:   3'- auauaaUUCGAaACUG--CGGCGcGGCC- -5'
14272 5' -49.6 NC_003521.1 + 235164 0.66 0.999405
Target:  5'- -----cGAGCgcgaUUGGCGUCGCGUCa- -3'
miRNA:   3'- auauaaUUCGa---AACUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 150692 0.66 0.999405
Target:  5'- -------uGCUgggUGcUGCUGCGCCGGc -3'
miRNA:   3'- auauaauuCGAa--ACuGCGGCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 73335 0.66 0.999509
Target:  5'- -cUGUUGuGCUUcaagUGcaacuacGCGCCGCGCaCGGc -3'
miRNA:   3'- auAUAAUuCGAA----AC-------UGCGGCGCG-GCC- -5'
14272 5' -49.6 NC_003521.1 + 57833 0.66 0.999519
Target:  5'- -----gAAGCUcggccggUGACGCCGaaCGCCGu -3'
miRNA:   3'- auauaaUUCGAa------ACUGCGGC--GCGGCc -5'
14272 5' -49.6 NC_003521.1 + 62632 0.66 0.999614
Target:  5'- -----cGAGCUUcGGCGCCGC-CCu- -3'
miRNA:   3'- auauaaUUCGAAaCUGCGGCGcGGcc -5'
14272 5' -49.6 NC_003521.1 + 103325 0.66 0.999692
Target:  5'- -----cAGGCgcUGACGCgccaGCGCCGu -3'
miRNA:   3'- auauaaUUCGaaACUGCGg---CGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 130302 0.66 0.999692
Target:  5'- -----gAGGCcgcGGCGCCGCGCauccaGGu -3'
miRNA:   3'- auauaaUUCGaaaCUGCGGCGCGg----CC- -5'
14272 5' -49.6 NC_003521.1 + 99448 0.66 0.999519
Target:  5'- -----gAAGCgguagGGCGCCagacaGCGCUGGa -3'
miRNA:   3'- auauaaUUCGaaa--CUGCGG-----CGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 111204 0.66 0.999519
Target:  5'- ----gUGGGCUg-GGCGaUgGCGCCGGa -3'
miRNA:   3'- auauaAUUCGAaaCUGC-GgCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 119233 0.66 0.999519
Target:  5'- --gGUUGAGC----ACGCCGCGCUu- -3'
miRNA:   3'- auaUAAUUCGaaacUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 129336 0.67 0.999103
Target:  5'- -----cAGGCggUUGAgCGCCGCGaaGGa -3'
miRNA:   3'- auauaaUUCGa-AACU-GCGGCGCggCC- -5'
14272 5' -49.6 NC_003521.1 + 108194 0.67 0.999103
Target:  5'- -------cGCcggUGGCGCCGCcGCCGa -3'
miRNA:   3'- auauaauuCGaa-ACUGCGGCG-CGGCc -5'
14272 5' -49.6 NC_003521.1 + 187449 0.67 0.998909
Target:  5'- -----gAAGCUgguGCGCCGCGUcagCGGg -3'
miRNA:   3'- auauaaUUCGAaacUGCGGCGCG---GCC- -5'
14272 5' -49.6 NC_003521.1 + 171643 0.67 0.998909
Target:  5'- gUAUGUcuAGC----GCGCCGCGgCGGg -3'
miRNA:   3'- -AUAUAauUCGaaacUGCGGCGCgGCC- -5'
14272 5' -49.6 NC_003521.1 + 137828 0.67 0.999103
Target:  5'- -uUAUUAAgGCgcucACGCCGCgGCUGGg -3'
miRNA:   3'- auAUAAUU-CGaaacUGCGGCG-CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.