Results 61 - 80 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14272 | 5' | -49.6 | NC_003521.1 | + | 174247 | 0.66 | 0.999519 |
Target: 5'- -----gGAGCUcaGACGCacguuGCGCUGGc -3' miRNA: 3'- auauaaUUCGAaaCUGCGg----CGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 181938 | 0.68 | 0.99731 |
Target: 5'- -----cGGGCUgcGAcuCGCCGCGCCa- -3' miRNA: 3'- auauaaUUCGAaaCU--GCGGCGCGGcc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 17355 | 0.66 | 0.999519 |
Target: 5'- -----cGGGCcgUGACGCCgGCGCggCGGc -3' miRNA: 3'- auauaaUUCGaaACUGCGG-CGCG--GCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 129651 | 0.66 | 0.999267 |
Target: 5'- ------------cGGCGCCGuCGCCGGg -3' miRNA: 3'- auauaauucgaaaCUGCGGC-GCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 170947 | 0.67 | 0.999103 |
Target: 5'- cUAUGgccUGGGCg-UGGCGCUGCGCggCGGc -3' miRNA: 3'- -AUAUa--AUUCGaaACUGCGGCGCG--GCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 197335 | 0.68 | 0.99731 |
Target: 5'- gAUGUUGgccgccgcggccAGCacgGcCGCCGCGCUGGc -3' miRNA: 3'- aUAUAAU------------UCGaaaCuGCGGCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 169769 | 0.68 | 0.997731 |
Target: 5'- ------cGGCccaUGGCGCCGCGCUuuGGg -3' miRNA: 3'- auauaauUCGaa-ACUGCGGCGCGG--CC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 214269 | 0.68 | 0.997731 |
Target: 5'- -------cGCccUGACGCCGuCGCUGGc -3' miRNA: 3'- auauaauuCGaaACUGCGGC-GCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 116881 | 0.73 | 0.940982 |
Target: 5'- aGUGgcgcGGCUgcGGCGgCGCGCCGGc -3' miRNA: 3'- aUAUaau-UCGAaaCUGCgGCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 166500 | 0.68 | 0.996826 |
Target: 5'- ------cAGCgg-GGCGCCGCGuCCGa -3' miRNA: 3'- auauaauUCGaaaCUGCGGCGC-GGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 62109 | 0.68 | 0.996826 |
Target: 5'- -------cGCUUcGGCGcCCGCGCgGGg -3' miRNA: 3'- auauaauuCGAAaCUGC-GGCGCGgCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 55537 | 0.68 | 0.996826 |
Target: 5'- ------cAGCga--GCGCCGCGCCGa -3' miRNA: 3'- auauaauUCGaaacUGCGGCGCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 119233 | 0.66 | 0.999519 |
Target: 5'- --gGUUGAGC----ACGCCGCGCUu- -3' miRNA: 3'- auaUAAUUCGaaacUGCGGCGCGGcc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 62632 | 0.66 | 0.999614 |
Target: 5'- -----cGAGCUUcGGCGCCGC-CCu- -3' miRNA: 3'- auauaaUUCGAAaCUGCGGCGcGGcc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 56463 | 0.66 | 0.999692 |
Target: 5'- -----cGAGa---GGCGCCGCGCCa- -3' miRNA: 3'- auauaaUUCgaaaCUGCGGCGCGGcc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 61693 | 0.68 | 0.99731 |
Target: 5'- -----gGAGCgucaggggUUGACGCUGUGCCu- -3' miRNA: 3'- auauaaUUCGa-------AACUGCGGCGCGGcc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 103325 | 0.66 | 0.999692 |
Target: 5'- -----cAGGCgcUGACGCgccaGCGCCGu -3' miRNA: 3'- auauaaUUCGaaACUGCGg---CGCGGCc -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 148421 | 0.7 | 0.983302 |
Target: 5'- cAUGgu--GCg--GGCgGCCGCGCCGGc -3' miRNA: 3'- aUAUaauuCGaaaCUG-CGGCGCGGCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 44235 | 0.7 | 0.983302 |
Target: 5'- -----cAAGCUcUGcCGCCGUGCgCGGg -3' miRNA: 3'- auauaaUUCGAaACuGCGGCGCG-GCC- -5' |
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14272 | 5' | -49.6 | NC_003521.1 | + | 111204 | 0.66 | 0.999519 |
Target: 5'- ----gUGGGCUg-GGCGaUgGCGCCGGa -3' miRNA: 3'- auauaAUUCGAaaCUGC-GgCGCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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