miRNA display CGI


Results 81 - 100 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14272 5' -49.6 NC_003521.1 + 102329 0.75 0.873959
Target:  5'- cGUcgUGcGCgugGGCGCCGaCGCCGGg -3'
miRNA:   3'- aUAuaAUuCGaaaCUGCGGC-GCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 73335 0.66 0.999509
Target:  5'- -cUGUUGuGCUUcaagUGcaacuacGCGCCGCGCaCGGc -3'
miRNA:   3'- auAUAAUuCGAA----AC-------UGCGGCGCG-GCC- -5'
14272 5' -49.6 NC_003521.1 + 57833 0.66 0.999519
Target:  5'- -----gAAGCUcggccggUGACGCCGaaCGCCGu -3'
miRNA:   3'- auauaaUUCGAa------ACUGCGGC--GCGGCc -5'
14272 5' -49.6 NC_003521.1 + 59428 0.66 0.999519
Target:  5'- -------cGCgacagcGGCGCCGCcGCCGGc -3'
miRNA:   3'- auauaauuCGaaa---CUGCGGCG-CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 130302 0.66 0.999692
Target:  5'- -----gAGGCcgcGGCGCCGCGCauccaGGu -3'
miRNA:   3'- auauaaUUCGaaaCUGCGGCGCGg----CC- -5'
14272 5' -49.6 NC_003521.1 + 103325 0.66 0.999692
Target:  5'- -----cAGGCgcUGACGCgccaGCGCCGu -3'
miRNA:   3'- auauaaUUCGaaACUGCGg---CGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 56463 0.66 0.999692
Target:  5'- -----cGAGa---GGCGCCGCGCCa- -3'
miRNA:   3'- auauaaUUCgaaaCUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 62632 0.66 0.999614
Target:  5'- -----cGAGCUUcGGCGCCGC-CCu- -3'
miRNA:   3'- auauaaUUCGAAaCUGCGGCGcGGcc -5'
14272 5' -49.6 NC_003521.1 + 61693 0.68 0.99731
Target:  5'- -----gGAGCgucaggggUUGACGCUGUGCCu- -3'
miRNA:   3'- auauaaUUCGa-------AACUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 166500 0.68 0.996826
Target:  5'- ------cAGCgg-GGCGCCGCGuCCGa -3'
miRNA:   3'- auauaauUCGaaaCUGCGGCGC-GGCc -5'
14272 5' -49.6 NC_003521.1 + 119233 0.66 0.999519
Target:  5'- --gGUUGAGC----ACGCCGCGCUu- -3'
miRNA:   3'- auaUAAUUCGaaacUGCGGCGCGGcc -5'
14272 5' -49.6 NC_003521.1 + 55537 0.68 0.996826
Target:  5'- ------cAGCga--GCGCCGCGCCGa -3'
miRNA:   3'- auauaauUCGaaacUGCGGCGCGGCc -5'
14272 5' -49.6 NC_003521.1 + 149396 0.68 0.996826
Target:  5'- ----gUGGGCUUcGugGCCGUgGCCGu -3'
miRNA:   3'- auauaAUUCGAAaCugCGGCG-CGGCc -5'
14272 5' -49.6 NC_003521.1 + 232820 0.68 0.996271
Target:  5'- -----gGAGCUacGGCGCUGCcCCGGu -3'
miRNA:   3'- auauaaUUCGAaaCUGCGGCGcGGCC- -5'
14272 5' -49.6 NC_003521.1 + 86580 0.69 0.994924
Target:  5'- -----gAGGCaggGcACGCCGCaGCCGGg -3'
miRNA:   3'- auauaaUUCGaaaC-UGCGGCG-CGGCC- -5'
14272 5' -49.6 NC_003521.1 + 166231 0.69 0.994115
Target:  5'- gGUAgaaGAGCg-UGAUGCCGC-CCGGc -3'
miRNA:   3'- aUAUaa-UUCGaaACUGCGGCGcGGCC- -5'
14272 5' -49.6 NC_003521.1 + 112063 0.69 0.993206
Target:  5'- -------uGCUggagGACGCCGCGgUGGg -3'
miRNA:   3'- auauaauuCGAaa--CUGCGGCGCgGCC- -5'
14272 5' -49.6 NC_003521.1 + 62109 0.68 0.996826
Target:  5'- -------cGCUUcGGCGcCCGCGCgGGg -3'
miRNA:   3'- auauaauuCGAAaCUGC-GGCGCGgCC- -5'
14272 5' -49.6 NC_003521.1 + 111204 0.66 0.999519
Target:  5'- ----gUGGGCUg-GGCGaUgGCGCCGGa -3'
miRNA:   3'- auauaAUUCGAaaCUGC-GgCGCGGCC- -5'
14272 5' -49.6 NC_003521.1 + 99448 0.66 0.999519
Target:  5'- -----gAAGCgguagGGCGCCagacaGCGCUGGa -3'
miRNA:   3'- auauaaUUCGaaa--CUGCGG-----CGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.