miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1428 3' -51.9 NC_001335.1 + 46802 0.66 0.857438
Target:  5'- -cUGGAUGGCGUCGggcagGuCGGuGGuGUCCa -3'
miRNA:   3'- cuACCUACUGCGGUa----C-GCCuUC-UAGG- -5'
1428 3' -51.9 NC_001335.1 + 29358 0.67 0.839867
Target:  5'- gGAUGccGGUGAuCGaCAUGCGcGAGGUCCg -3'
miRNA:   3'- -CUAC--CUACU-GCgGUACGCcUUCUAGG- -5'
1428 3' -51.9 NC_001335.1 + 49461 0.67 0.830731
Target:  5'- uGAUGGcucggugGGCaGCCucGCGGAAGGUCa -3'
miRNA:   3'- -CUACCua-----CUG-CGGuaCGCCUUCUAGg -5'
1428 3' -51.9 NC_001335.1 + 33224 0.68 0.739909
Target:  5'- -cUGGA--ACGCCAggagcugGUGGAGGGUCa -3'
miRNA:   3'- cuACCUacUGCGGUa------CGCCUUCUAGg -5'
1428 3' -51.9 NC_001335.1 + 45557 0.69 0.729079
Target:  5'- --aGGAcGAgGCCAucaaggaucUGCGGAAGugguUCCg -3'
miRNA:   3'- cuaCCUaCUgCGGU---------ACGCCUUCu---AGG- -5'
1428 3' -51.9 NC_001335.1 + 39036 0.69 0.718147
Target:  5'- ---cGGUGAUGCCGUagGUGGccAGGAUCCg -3'
miRNA:   3'- cuacCUACUGCGGUA--CGCC--UUCUAGG- -5'
1428 3' -51.9 NC_001335.1 + 25383 0.69 0.68486
Target:  5'- gGAUGGGgaucgcUGAagacucaGCgCA-GCGGAGGAUCCa -3'
miRNA:   3'- -CUACCU------ACUg------CG-GUaCGCCUUCUAGG- -5'
1428 3' -51.9 NC_001335.1 + 36545 0.7 0.639785
Target:  5'- --cGGAccccaccacgGugGCCGUGgGuGGAGAUCCa -3'
miRNA:   3'- cuaCCUa---------CugCGGUACgC-CUUCUAGG- -5'
1428 3' -51.9 NC_001335.1 + 9491 0.73 0.485099
Target:  5'- --gGGAaGAgGCCAUGCGGAucgccuaccGGAUCa -3'
miRNA:   3'- cuaCCUaCUgCGGUACGCCU---------UCUAGg -5'
1428 3' -51.9 NC_001335.1 + 26149 0.75 0.395445
Target:  5'- aGGUGGGUcGACGCCAguagccagaGCGGAGGgAUCg -3'
miRNA:   3'- -CUACCUA-CUGCGGUa--------CGCCUUC-UAGg -5'
1428 3' -51.9 NC_001335.1 + 1482 1.13 0.001174
Target:  5'- cGAUGGAUGACGCCAUGCGGAAGAUCCu -3'
miRNA:   3'- -CUACCUACUGCGGUACGCCUUCUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.