miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14280 5' -53.9 NC_003521.1 + 31366 0.66 0.981554
Target:  5'- aGCCGCuGCAcgucGCCgGACAGCAUGcgUa- -3'
miRNA:   3'- -UGGUG-CGU----CGGgCUGUUGUACuaGac -5'
14280 5' -53.9 NC_003521.1 + 126694 0.66 0.981554
Target:  5'- cGCCAgGCAGUacUCGAC--CAUGAUCUu -3'
miRNA:   3'- -UGGUgCGUCG--GGCUGuuGUACUAGAc -5'
14280 5' -53.9 NC_003521.1 + 32099 0.66 0.985291
Target:  5'- cGCCAUGC-GUuuGGCGGCGcggcUGAUCUc -3'
miRNA:   3'- -UGGUGCGuCGggCUGUUGU----ACUAGAc -5'
14280 5' -53.9 NC_003521.1 + 222030 0.66 0.986928
Target:  5'- gGCCACGCgaaagcagcgcuGGCCCucCAccgccuGCGUGGUCUc -3'
miRNA:   3'- -UGGUGCG------------UCGGGcuGU------UGUACUAGAc -5'
14280 5' -53.9 NC_003521.1 + 54534 0.66 0.979438
Target:  5'- cGCCGCuGgGGCCCGGCGGCuuuuUGAcgUUGc -3'
miRNA:   3'- -UGGUG-CgUCGGGCUGUUGu---ACUa-GAC- -5'
14280 5' -53.9 NC_003521.1 + 228990 0.66 0.986928
Target:  5'- gGCgGCGCAGgaCCGGCAGCAcgGAgCUa -3'
miRNA:   3'- -UGgUGCGUCg-GGCUGUUGUa-CUaGAc -5'
14280 5' -53.9 NC_003521.1 + 197447 0.66 0.979438
Target:  5'- gGCCAgGCGGCgCCaGCG-CAUGcUCUGg -3'
miRNA:   3'- -UGGUgCGUCG-GGcUGUuGUACuAGAC- -5'
14280 5' -53.9 NC_003521.1 + 72272 0.66 0.977146
Target:  5'- uACC-CGCAGCCCGcCAGCGccgccgccGcgCUGg -3'
miRNA:   3'- -UGGuGCGUCGGGCuGUUGUa-------CuaGAC- -5'
14280 5' -53.9 NC_003521.1 + 184127 0.66 0.985291
Target:  5'- --uGCGCGGCCgaGACGGCGuguUGAUCg- -3'
miRNA:   3'- uggUGCGUCGGg-CUGUUGU---ACUAGac -5'
14280 5' -53.9 NC_003521.1 + 227508 0.67 0.972009
Target:  5'- uGCCACggcagGCAGCCCaGGCu-CAUguugGAUCUGg -3'
miRNA:   3'- -UGGUG-----CGUCGGG-CUGuuGUA----CUAGAC- -5'
14280 5' -53.9 NC_003521.1 + 44529 0.67 0.968853
Target:  5'- gGCCAgcaucaaGCGGCCCGGCAcgcgcucACAUGAg--- -3'
miRNA:   3'- -UGGUg------CGUCGGGCUGU-------UGUACUagac -5'
14280 5' -53.9 NC_003521.1 + 87971 0.67 0.96915
Target:  5'- cGCCuCGCGGCgCGAgGACucgGUGaAUCUGg -3'
miRNA:   3'- -UGGuGCGUCGgGCUgUUG---UAC-UAGAC- -5'
14280 5' -53.9 NC_003521.1 + 236233 0.67 0.96915
Target:  5'- cCCGCGCGGCCCGuuAGCAa------ -3'
miRNA:   3'- uGGUGCGUCGGGCugUUGUacuagac -5'
14280 5' -53.9 NC_003521.1 + 165145 0.67 0.972009
Target:  5'- gACCGCGguG-CCGGCGugAUGGUg-- -3'
miRNA:   3'- -UGGUGCguCgGGCUGUugUACUAgac -5'
14280 5' -53.9 NC_003521.1 + 160061 0.67 0.974672
Target:  5'- cGCCACGg---UCGACAGCAUGAUCg- -3'
miRNA:   3'- -UGGUGCgucgGGCUGUUGUACUAGac -5'
14280 5' -53.9 NC_003521.1 + 172795 0.67 0.96282
Target:  5'- gACCACGCcGCCCGugGcgGUGAggCUc -3'
miRNA:   3'- -UGGUGCGuCGGGCugUugUACUa-GAc -5'
14280 5' -53.9 NC_003521.1 + 60691 0.67 0.96282
Target:  5'- gGCCGCGCGGgggaCCCGGgGGCGgcgcgGGUCg- -3'
miRNA:   3'- -UGGUGCGUC----GGGCUgUUGUa----CUAGac -5'
14280 5' -53.9 NC_003521.1 + 36956 0.67 0.96282
Target:  5'- aGCCGaGCuGCCCGGCgAACAUGAcgUgUGg -3'
miRNA:   3'- -UGGUgCGuCGGGCUG-UUGUACU--AgAC- -5'
14280 5' -53.9 NC_003521.1 + 62462 0.67 0.966089
Target:  5'- cGCCAagcaGCGGCCCGuCuACAuguUGAUCa- -3'
miRNA:   3'- -UGGUg---CGUCGGGCuGuUGU---ACUAGac -5'
14280 5' -53.9 NC_003521.1 + 232853 0.67 0.966089
Target:  5'- cGCCGCGgaccccuccCGGCCgCGACAccGCGgcGAUCUGg -3'
miRNA:   3'- -UGGUGC---------GUCGG-GCUGU--UGUa-CUAGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.