miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14280 5' -53.9 NC_003521.1 + 184051 0.66 0.979438
Target:  5'- cGCgCACaGCAGCUgGACGGCGU--UCUGa -3'
miRNA:   3'- -UG-GUG-CGUCGGgCUGUUGUAcuAGAC- -5'
14280 5' -53.9 NC_003521.1 + 50776 0.66 0.981554
Target:  5'- gACCGCGCGGCgguccuggucgaUCGGCGACgGUGAUg-- -3'
miRNA:   3'- -UGGUGCGUCG------------GGCUGUUG-UACUAgac -5'
14280 5' -53.9 NC_003521.1 + 72272 0.66 0.977146
Target:  5'- uACC-CGCAGCCCGcCAGCGccgccgccGcgCUGg -3'
miRNA:   3'- -UGGuGCGUCGGGCuGUUGUa-------CuaGAC- -5'
14280 5' -53.9 NC_003521.1 + 32099 0.66 0.985291
Target:  5'- cGCCAUGC-GUuuGGCGGCGcggcUGAUCUc -3'
miRNA:   3'- -UGGUGCGuCGggCUGUUGU----ACUAGAc -5'
14280 5' -53.9 NC_003521.1 + 184127 0.66 0.985291
Target:  5'- --uGCGCGGCCgaGACGGCGuguUGAUCg- -3'
miRNA:   3'- uggUGCGUCGGg-CUGUUGU---ACUAGac -5'
14280 5' -53.9 NC_003521.1 + 86056 0.66 0.977146
Target:  5'- uCCACGCcguuGCCCGAgAAgUAgccGAUCUGa -3'
miRNA:   3'- uGGUGCGu---CGGGCUgUU-GUa--CUAGAC- -5'
14280 5' -53.9 NC_003521.1 + 101049 0.66 0.977146
Target:  5'- uCCAUgGCGGCcgCCGACGGCcgGAUCc- -3'
miRNA:   3'- uGGUG-CGUCG--GGCUGUUGuaCUAGac -5'
14280 5' -53.9 NC_003521.1 + 128680 0.66 0.977146
Target:  5'- gGCC-CGagAGCagCGACAugAUGAUCUGc -3'
miRNA:   3'- -UGGuGCg-UCGg-GCUGUugUACUAGAC- -5'
14280 5' -53.9 NC_003521.1 + 197447 0.66 0.979438
Target:  5'- gGCCAgGCGGCgCCaGCG-CAUGcUCUGg -3'
miRNA:   3'- -UGGUgCGUCG-GGcUGUuGUACuAGAC- -5'
14280 5' -53.9 NC_003521.1 + 57244 0.66 0.986928
Target:  5'- -gCACGCAGCCCGuuuugugUAUGGUgUGg -3'
miRNA:   3'- ugGUGCGUCGGGCuguu---GUACUAgAC- -5'
14280 5' -53.9 NC_003521.1 + 228990 0.66 0.986928
Target:  5'- gGCgGCGCAGgaCCGGCAGCAcgGAgCUa -3'
miRNA:   3'- -UGgUGCGUCg-GGCUGUUGUa-CUaGAc -5'
14280 5' -53.9 NC_003521.1 + 90572 0.66 0.979438
Target:  5'- gGCCGCGguGCaggCCGACGugACGUGcUCg- -3'
miRNA:   3'- -UGGUGCguCG---GGCUGU--UGUACuAGac -5'
14280 5' -53.9 NC_003521.1 + 31366 0.66 0.981554
Target:  5'- aGCCGCuGCAcgucGCCgGACAGCAUGcgUa- -3'
miRNA:   3'- -UGGUG-CGU----CGGgCUGUUGUACuaGac -5'
14280 5' -53.9 NC_003521.1 + 54534 0.66 0.979438
Target:  5'- cGCCGCuGgGGCCCGGCGGCuuuuUGAcgUUGc -3'
miRNA:   3'- -UGGUG-CgUCGGGCUGUUGu---ACUa-GAC- -5'
14280 5' -53.9 NC_003521.1 + 125894 0.66 0.985119
Target:  5'- uCCACGCccagcaugcacgaGGCCCGGCcGCgcggguuguuuGUGAUCUu -3'
miRNA:   3'- uGGUGCG-------------UCGGGCUGuUG-----------UACUAGAc -5'
14280 5' -53.9 NC_003521.1 + 182428 0.66 0.979438
Target:  5'- cAUCACGCGGCCgCGGCAgaucccccuguGCAcgggGGUCa- -3'
miRNA:   3'- -UGGUGCGUCGG-GCUGU-----------UGUa---CUAGac -5'
14280 5' -53.9 NC_003521.1 + 221357 0.66 0.983502
Target:  5'- cACCugGCcGCgCaGCGACAUGGUCc- -3'
miRNA:   3'- -UGGugCGuCGgGcUGUUGUACUAGac -5'
14280 5' -53.9 NC_003521.1 + 124985 0.66 0.983502
Target:  5'- uCCACGCGGCgCaGCAGCGUcagGGUCa- -3'
miRNA:   3'- uGGUGCGUCGgGcUGUUGUA---CUAGac -5'
14280 5' -53.9 NC_003521.1 + 222030 0.66 0.986928
Target:  5'- gGCCACGCgaaagcagcgcuGGCCCucCAccgccuGCGUGGUCUc -3'
miRNA:   3'- -UGGUGCG------------UCGGGcuGU------UGUACUAGAc -5'
14280 5' -53.9 NC_003521.1 + 211002 0.66 0.985291
Target:  5'- uCUGCaGCGuGCCCGACAagACAUGAUUcuUGa -3'
miRNA:   3'- uGGUG-CGU-CGGGCUGU--UGUACUAG--AC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.