miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14280 5' -53.9 NC_003521.1 + 20714 0.68 0.943187
Target:  5'- aACCugGC-GCgUGACGugAUGAUCg- -3'
miRNA:   3'- -UGGugCGuCGgGCUGUugUACUAGac -5'
14280 5' -53.9 NC_003521.1 + 201260 0.7 0.886597
Target:  5'- cGCCGCGCAGCCaGAUGGCcgGcGUCg- -3'
miRNA:   3'- -UGGUGCGUCGGgCUGUUGuaC-UAGac -5'
14280 5' -53.9 NC_003521.1 + 66566 0.7 0.906008
Target:  5'- gACCugGCGcGCCagcGCAACGUGcGUCUGa -3'
miRNA:   3'- -UGGugCGU-CGGgc-UGUUGUAC-UAGAC- -5'
14280 5' -53.9 NC_003521.1 + 164339 0.7 0.906008
Target:  5'- cGCCACGCGuCCCGGCGACAg---CUc -3'
miRNA:   3'- -UGGUGCGUcGGGCUGUUGUacuaGAc -5'
14280 5' -53.9 NC_003521.1 + 222365 0.69 0.923347
Target:  5'- cGCCGCGCAGCCCGcggucgaaGCGGCAc------ -3'
miRNA:   3'- -UGGUGCGUCGGGC--------UGUUGUacuagac -5'
14280 5' -53.9 NC_003521.1 + 63361 0.69 0.928659
Target:  5'- gGCCGCGCAGaCCGuCAGCAgcuUCUa -3'
miRNA:   3'- -UGGUGCGUCgGGCuGUUGUacuAGAc -5'
14280 5' -53.9 NC_003521.1 + 154134 0.69 0.928659
Target:  5'- cGCCGcCGCGGCCCGccagauacgACGACGcgcUGAUCc- -3'
miRNA:   3'- -UGGU-GCGUCGGGC---------UGUUGU---ACUAGac -5'
14280 5' -53.9 NC_003521.1 + 222095 0.69 0.938578
Target:  5'- cGCCcUGCAGCgCCGGCAGCGUcucGAggcgCUGc -3'
miRNA:   3'- -UGGuGCGUCG-GGCUGUUGUA---CUa---GAC- -5'
14280 5' -53.9 NC_003521.1 + 87655 0.68 0.943187
Target:  5'- gGCUggagGCGCAGCCC-ACGAUGUGGUugCUGa -3'
miRNA:   3'- -UGG----UGCGUCGGGcUGUUGUACUA--GAC- -5'
14280 5' -53.9 NC_003521.1 + 47157 0.71 0.865201
Target:  5'- cGCCGCGCuugCCGACgAGCAcgaUGAUCUGa -3'
miRNA:   3'- -UGGUGCGucgGGCUG-UUGU---ACUAGAC- -5'
14280 5' -53.9 NC_003521.1 + 177485 0.71 0.849899
Target:  5'- uAUCGCGCGGCgCCGACGACAUa----- -3'
miRNA:   3'- -UGGUGCGUCG-GGCUGUUGUAcuagac -5'
14280 5' -53.9 NC_003521.1 + 150822 0.72 0.825508
Target:  5'- cGCUuCGUAGCCCGGCGcaacgACGUGGauuUCUGg -3'
miRNA:   3'- -UGGuGCGUCGGGCUGU-----UGUACU---AGAC- -5'
14280 5' -53.9 NC_003521.1 + 54499 0.74 0.684769
Target:  5'- gGCCG-GCGGCCCGGCGugGaccagGAUCUGc -3'
miRNA:   3'- -UGGUgCGUCGGGCUGUugUa----CUAGAC- -5'
14280 5' -53.9 NC_003521.1 + 123931 0.74 0.684769
Target:  5'- cACCAguugcaGCGGCgCCGAUAGCAgGAUCUGg -3'
miRNA:   3'- -UGGUg-----CGUCG-GGCUGUUGUaCUAGAC- -5'
14280 5' -53.9 NC_003521.1 + 116610 0.73 0.76293
Target:  5'- gUCGCuGCGGCCCGACAAgGUGGUg-- -3'
miRNA:   3'- uGGUG-CGUCGGGCUGUUgUACUAgac -5'
14280 5' -53.9 NC_003521.1 + 74199 0.73 0.76293
Target:  5'- -gCGCGCGGCCCGACGcCGUcuUCUGc -3'
miRNA:   3'- ugGUGCGUCGGGCUGUuGUAcuAGAC- -5'
14280 5' -53.9 NC_003521.1 + 204308 0.73 0.76293
Target:  5'- gACCGgcgggugacCGCAGUCCGACGcCAUGGUCg- -3'
miRNA:   3'- -UGGU---------GCGUCGGGCUGUuGUACUAGac -5'
14280 5' -53.9 NC_003521.1 + 78108 0.72 0.790607
Target:  5'- cACCACGCAGCCCGAgAuguACAccuUGGUg-- -3'
miRNA:   3'- -UGGUGCGUCGGGCUgU---UGU---ACUAgac -5'
14280 5' -53.9 NC_003521.1 + 64215 0.72 0.808371
Target:  5'- gGCCACGCAGCagcgCGAgGACGUGcUCa- -3'
miRNA:   3'- -UGGUGCGUCGg---GCUgUUGUACuAGac -5'
14280 5' -53.9 NC_003521.1 + 131882 0.72 0.825508
Target:  5'- uGCCGCGCGuGUCgGGCAGC--GAUCUGg -3'
miRNA:   3'- -UGGUGCGU-CGGgCUGUUGuaCUAGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.