miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14280 5' -53.9 NC_003521.1 + 12099 1.07 0.008725
Target:  5'- cACCACGCAGCCCGACAACAUGAUCUGc -3'
miRNA:   3'- -UGGUGCGUCGGGCUGUUGUACUAGAC- -5'
14280 5' -53.9 NC_003521.1 + 16942 0.81 0.371677
Target:  5'- aGCCuAUGgAGCCCGACAACGUGGUCc- -3'
miRNA:   3'- -UGG-UGCgUCGGGCUGUUGUACUAGac -5'
14280 5' -53.9 NC_003521.1 + 105809 0.79 0.467074
Target:  5'- gGCCACGguGCCCGGCAGCcagAUGGUg-- -3'
miRNA:   3'- -UGGUGCguCGGGCUGUUG---UACUAgac -5'
14280 5' -53.9 NC_003521.1 + 87723 0.76 0.58365
Target:  5'- gUCGCGCGcGCCCGGCGGCGUGGUg-- -3'
miRNA:   3'- uGGUGCGU-CGGGCUGUUGUACUAgac -5'
14280 5' -53.9 NC_003521.1 + 86941 0.76 0.624091
Target:  5'- uACCGCGC-GCUgGACGACGagGAUCUGg -3'
miRNA:   3'- -UGGUGCGuCGGgCUGUUGUa-CUAGAC- -5'
14280 5' -53.9 NC_003521.1 + 123931 0.74 0.684769
Target:  5'- cACCAguugcaGCGGCgCCGAUAGCAgGAUCUGg -3'
miRNA:   3'- -UGGUg-----CGUCG-GGCUGUUGUaCUAGAC- -5'
14280 5' -53.9 NC_003521.1 + 54499 0.74 0.684769
Target:  5'- gGCCG-GCGGCCCGGCGugGaccagGAUCUGc -3'
miRNA:   3'- -UGGUgCGUCGGGCUGUugUa----CUAGAC- -5'
14280 5' -53.9 NC_003521.1 + 88948 0.73 0.753465
Target:  5'- uGCUGCaGCAcagcGCCCGGCGAC-UGAUCUGc -3'
miRNA:   3'- -UGGUG-CGU----CGGGCUGUUGuACUAGAC- -5'
14280 5' -53.9 NC_003521.1 + 15776 0.73 0.761989
Target:  5'- aGCUACGCGaccaguuGUUgGACGACGUGAUCUGc -3'
miRNA:   3'- -UGGUGCGU-------CGGgCUGUUGUACUAGAC- -5'
14280 5' -53.9 NC_003521.1 + 116610 0.73 0.76293
Target:  5'- gUCGCuGCGGCCCGACAAgGUGGUg-- -3'
miRNA:   3'- uGGUG-CGUCGGGCUGUUgUACUAgac -5'
14280 5' -53.9 NC_003521.1 + 204308 0.73 0.76293
Target:  5'- gACCGgcgggugacCGCAGUCCGACGcCAUGGUCg- -3'
miRNA:   3'- -UGGU---------GCGUCGGGCUGUuGUACUAGac -5'
14280 5' -53.9 NC_003521.1 + 74199 0.73 0.76293
Target:  5'- -gCGCGCGGCCCGACGcCGUcuUCUGc -3'
miRNA:   3'- ugGUGCGUCGGGCUGUuGUAcuAGAC- -5'
14280 5' -53.9 NC_003521.1 + 116742 0.73 0.78151
Target:  5'- cCCACGCcgucgGGCCCGACGACGaaccauccUGAcgCUGa -3'
miRNA:   3'- uGGUGCG-----UCGGGCUGUUGU--------ACUa-GAC- -5'
14280 5' -53.9 NC_003521.1 + 91720 0.73 0.78151
Target:  5'- gACCAC-CAGCuuGGCGACGUGGUagaggCUGa -3'
miRNA:   3'- -UGGUGcGUCGggCUGUUGUACUA-----GAC- -5'
14280 5' -53.9 NC_003521.1 + 173266 0.73 0.78151
Target:  5'- gGCC-CGCcGCCUGACAcaguuggcGCAUGAUCUc -3'
miRNA:   3'- -UGGuGCGuCGGGCUGU--------UGUACUAGAc -5'
14280 5' -53.9 NC_003521.1 + 138189 0.72 0.790607
Target:  5'- uUCACGgacgaGGCCCuGAcCGACAUGAUCUGg -3'
miRNA:   3'- uGGUGCg----UCGGG-CU-GUUGUACUAGAC- -5'
14280 5' -53.9 NC_003521.1 + 78108 0.72 0.790607
Target:  5'- cACCACGCAGCCCGAgAuguACAccuUGGUg-- -3'
miRNA:   3'- -UGGUGCGUCGGGCUgU---UGU---ACUAgac -5'
14280 5' -53.9 NC_003521.1 + 70356 0.72 0.790607
Target:  5'- cGCCGCGCuAG-UCGGCGACAUGA-CUGg -3'
miRNA:   3'- -UGGUGCG-UCgGGCUGUUGUACUaGAC- -5'
14280 5' -53.9 NC_003521.1 + 89867 0.72 0.799563
Target:  5'- cGCCGCGUcGCgCGACuGCAcgaUGAUCUGa -3'
miRNA:   3'- -UGGUGCGuCGgGCUGuUGU---ACUAGAC- -5'
14280 5' -53.9 NC_003521.1 + 16406 0.72 0.799563
Target:  5'- cACCACGCAGCgccuggCCGGCGAgGUGuaccggCUGg -3'
miRNA:   3'- -UGGUGCGUCG------GGCUGUUgUACua----GAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.