miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14280 5' -53.9 NC_003521.1 + 1032 0.7 0.886597
Target:  5'- cGCCGCGCAGCCaGAUGGCcgGcGUCg- -3'
miRNA:   3'- -UGGUGCGUCGGgCUGUUGuaC-UAGac -5'
14280 5' -53.9 NC_003521.1 + 6052 0.7 0.906008
Target:  5'- uGCCccaGCGGCCCcGCAggGCGUGAUCa- -3'
miRNA:   3'- -UGGug-CGUCGGGcUGU--UGUACUAGac -5'
14280 5' -53.9 NC_003521.1 + 12099 1.07 0.008725
Target:  5'- cACCACGCAGCCCGACAACAUGAUCUGc -3'
miRNA:   3'- -UGGUGCGUCGGGCUGUUGUACUAGAC- -5'
14280 5' -53.9 NC_003521.1 + 15776 0.73 0.761989
Target:  5'- aGCUACGCGaccaguuGUUgGACGACGUGAUCUGc -3'
miRNA:   3'- -UGGUGCGU-------CGGgCUGUUGUACUAGAC- -5'
14280 5' -53.9 NC_003521.1 + 16028 0.72 0.808371
Target:  5'- cGCCACGCGcGuCCCGcACGACGUGGUg-- -3'
miRNA:   3'- -UGGUGCGU-C-GGGC-UGUUGUACUAgac -5'
14280 5' -53.9 NC_003521.1 + 16406 0.72 0.799563
Target:  5'- cACCACGCAGCgccuggCCGGCGAgGUGuaccggCUGg -3'
miRNA:   3'- -UGGUGCGUCG------GGCUGUUgUACua----GAC- -5'
14280 5' -53.9 NC_003521.1 + 16942 0.81 0.371677
Target:  5'- aGCCuAUGgAGCCCGACAACGUGGUCc- -3'
miRNA:   3'- -UGG-UGCgUCGGGCUGUUGUACUAGac -5'
14280 5' -53.9 NC_003521.1 + 20714 0.68 0.943187
Target:  5'- aACCugGC-GCgUGACGugAUGAUCg- -3'
miRNA:   3'- -UGGugCGuCGgGCUGUugUACUAGac -5'
14280 5' -53.9 NC_003521.1 + 25866 0.67 0.974672
Target:  5'- aACCACGCugugaucGCCCagGACGA--UGGUCUGc -3'
miRNA:   3'- -UGGUGCGu------CGGG--CUGUUguACUAGAC- -5'
14280 5' -53.9 NC_003521.1 + 26016 0.71 0.849899
Target:  5'- cGCCGCGCccggcGCCCGACGGCgGUGAa--- -3'
miRNA:   3'- -UGGUGCGu----CGGGCUGUUG-UACUagac -5'
14280 5' -53.9 NC_003521.1 + 26188 0.69 0.923347
Target:  5'- cAUCACGguGCUCuuCAGCAcgcUGGUCUGg -3'
miRNA:   3'- -UGGUGCguCGGGcuGUUGU---ACUAGAC- -5'
14280 5' -53.9 NC_003521.1 + 31366 0.66 0.981554
Target:  5'- aGCCGCuGCAcgucGCCgGACAGCAUGcgUa- -3'
miRNA:   3'- -UGGUG-CGU----CGGgCUGUUGUACuaGac -5'
14280 5' -53.9 NC_003521.1 + 32099 0.66 0.985291
Target:  5'- cGCCAUGC-GUuuGGCGGCGcggcUGAUCUc -3'
miRNA:   3'- -UGGUGCGuCGggCUGUUGU----ACUAGAc -5'
14280 5' -53.9 NC_003521.1 + 35073 0.7 0.886597
Target:  5'- gGCCAUGCGGgaCGAUAACuggGGUCUGu -3'
miRNA:   3'- -UGGUGCGUCggGCUGUUGua-CUAGAC- -5'
14280 5' -53.9 NC_003521.1 + 36956 0.67 0.96282
Target:  5'- aGCCGaGCuGCCCGGCgAACAUGAcgUgUGg -3'
miRNA:   3'- -UGGUgCGuCGGGCUG-UUGUACU--AgAC- -5'
14280 5' -53.9 NC_003521.1 + 44529 0.67 0.968853
Target:  5'- gGCCAgcaucaaGCGGCCCGGCAcgcgcucACAUGAg--- -3'
miRNA:   3'- -UGGUg------CGUCGGGCUGU-------UGUACUagac -5'
14280 5' -53.9 NC_003521.1 + 47157 0.71 0.865201
Target:  5'- cGCCGCGCuugCCGACgAGCAcgaUGAUCUGa -3'
miRNA:   3'- -UGGUGCGucgGGCUG-UUGU---ACUAGAC- -5'
14280 5' -53.9 NC_003521.1 + 47441 0.67 0.974672
Target:  5'- gGCaCAUGCAGCCgGGCGccGCAcuccUGGUCg- -3'
miRNA:   3'- -UG-GUGCGUCGGgCUGU--UGU----ACUAGac -5'
14280 5' -53.9 NC_003521.1 + 47628 0.67 0.972009
Target:  5'- uCCAgGCGGCCgUGACGGCGgc-UCUGg -3'
miRNA:   3'- uGGUgCGUCGG-GCUGUUGUacuAGAC- -5'
14280 5' -53.9 NC_003521.1 + 50776 0.66 0.981554
Target:  5'- gACCGCGCGGCgguccuggucgaUCGGCGACgGUGAUg-- -3'
miRNA:   3'- -UGGUGCGUCG------------GGCUGUUG-UACUAgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.