miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14282 5' -56.1 NC_003521.1 + 69967 0.67 0.925521
Target:  5'- cCCGCCccCGCGGagaagCCGAcGCGCGUCu -3'
miRNA:   3'- aGGUGGcaGUGCCa----GGCU-CGUGUAGu -5'
14282 5' -56.1 NC_003521.1 + 146361 0.67 0.925521
Target:  5'- -gCGCCGUaCACGGggcgguUCCGGGUACAg-- -3'
miRNA:   3'- agGUGGCA-GUGCC------AGGCUCGUGUagu -5'
14282 5' -56.1 NC_003521.1 + 155829 0.67 0.925521
Target:  5'- gCCugCGUCAuCGGUUaccaGGGCACGg-- -3'
miRNA:   3'- aGGugGCAGU-GCCAGg---CUCGUGUagu -5'
14282 5' -56.1 NC_003521.1 + 225441 0.68 0.922366
Target:  5'- -aCGcCCGUCagGCucuuuaaaggaaaagGGUCCGAGUACGUCAc -3'
miRNA:   3'- agGU-GGCAG--UG---------------CCAGGCUCGUGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 99019 0.68 0.920219
Target:  5'- gUUGCCGcUCGaGGUCCaGGCGCAUCAc -3'
miRNA:   3'- aGGUGGC-AGUgCCAGGcUCGUGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 57679 0.68 0.920219
Target:  5'- -aCACCGUCugGGUCU--GCACGg-- -3'
miRNA:   3'- agGUGGCAGugCCAGGcuCGUGUagu -5'
14282 5' -56.1 NC_003521.1 + 76957 0.68 0.920219
Target:  5'- uUCCAgcaUGUCGCGG-CCGAuGCGCGUg- -3'
miRNA:   3'- -AGGUg--GCAGUGCCaGGCU-CGUGUAgu -5'
14282 5' -56.1 NC_003521.1 + 5707 0.68 0.91693
Target:  5'- -gCGCCGUCaccgggguuauguguACGGcCCGGGCACGgcgCGu -3'
miRNA:   3'- agGUGGCAG---------------UGCCaGGCUCGUGUa--GU- -5'
14282 5' -56.1 NC_003521.1 + 120807 0.68 0.914694
Target:  5'- gCUGCUGUCGauGUCCGAGUccuCGUCGg -3'
miRNA:   3'- aGGUGGCAGUgcCAGGCUCGu--GUAGU- -5'
14282 5' -56.1 NC_003521.1 + 52816 0.68 0.914694
Target:  5'- aCCGCCuUCACGGugaaaaUCUGcAGCACGUUg -3'
miRNA:   3'- aGGUGGcAGUGCC------AGGC-UCGUGUAGu -5'
14282 5' -56.1 NC_003521.1 + 70177 0.68 0.908949
Target:  5'- gUCCACuCGUUGCGGUgguacaCCG-GCAgGUCGg -3'
miRNA:   3'- -AGGUG-GCAGUGCCA------GGCuCGUgUAGU- -5'
14282 5' -56.1 NC_003521.1 + 128788 0.68 0.908949
Target:  5'- gUCGCaGUaCGCGGUCgGGGCACcgCAg -3'
miRNA:   3'- aGGUGgCA-GUGCCAGgCUCGUGuaGU- -5'
14282 5' -56.1 NC_003521.1 + 223477 0.68 0.908949
Target:  5'- gCCGgCGUCACGGcCCGggagguggGGCGgAUCGg -3'
miRNA:   3'- aGGUgGCAGUGCCaGGC--------UCGUgUAGU- -5'
14282 5' -56.1 NC_003521.1 + 218671 0.68 0.908949
Target:  5'- cUCCACCGUCuccCGGUaaGAGgGCggCGg -3'
miRNA:   3'- -AGGUGGCAGu--GCCAggCUCgUGuaGU- -5'
14282 5' -56.1 NC_003521.1 + 121372 0.68 0.902984
Target:  5'- uUCaCACUGUCGCGccuccaUCgCGAGUACAUCGu -3'
miRNA:   3'- -AG-GUGGCAGUGCc-----AG-GCUCGUGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 223022 0.68 0.902984
Target:  5'- gUCCGCCGgucgCACGG-CC-AGCACGcCGa -3'
miRNA:   3'- -AGGUGGCa---GUGCCaGGcUCGUGUaGU- -5'
14282 5' -56.1 NC_003521.1 + 218245 0.68 0.902984
Target:  5'- --gGCCGUCACgGGUgCGA-CGCGUCAg -3'
miRNA:   3'- aggUGGCAGUG-CCAgGCUcGUGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 133376 0.68 0.896802
Target:  5'- gUCCGCCGgcacagCgcgGCGGUCCGcGCuuucGCGUCGg -3'
miRNA:   3'- -AGGUGGCa-----G---UGCCAGGCuCG----UGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 148912 0.68 0.896802
Target:  5'- -gCGCCGcCGCGGcaUCGAGCACcgCAg -3'
miRNA:   3'- agGUGGCaGUGCCa-GGCUCGUGuaGU- -5'
14282 5' -56.1 NC_003521.1 + 63487 0.68 0.896802
Target:  5'- cUCCAgCGUCcUGGaCCGGGCGCugAUCGa -3'
miRNA:   3'- -AGGUgGCAGuGCCaGGCUCGUG--UAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.