Results 41 - 60 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14282 | 5' | -56.1 | NC_003521.1 | + | 232294 | 0.76 | 0.520848 |
Target: 5'- gUCgCGCC--CACGGUCCGGGCACAaUCAa -3' miRNA: 3'- -AG-GUGGcaGUGCCAGGCUCGUGU-AGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 119660 | 0.77 | 0.44502 |
Target: 5'- cUCCGCUuuguggauguagguGUUGCGGUCCGAGCACGaCAg -3' miRNA: 3'- -AGGUGG--------------CAGUGCCAGGCUCGUGUaGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 220189 | 0.78 | 0.38855 |
Target: 5'- cCCACCagcgCGCGGcucUCCGAGCACAUCu -3' miRNA: 3'- aGGUGGca--GUGCC---AGGCUCGUGUAGu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 124475 | 0.8 | 0.327583 |
Target: 5'- gCCGCCGcgcUCGCGGUCCGucCGCGUCAg -3' miRNA: 3'- aGGUGGC---AGUGCCAGGCucGUGUAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 27555 | 0.7 | 0.806288 |
Target: 5'- cUCCACCGUC---GUCCGGGCggucgacGCGUCGg -3' miRNA: 3'- -AGGUGGCAGugcCAGGCUCG-------UGUAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 89537 | 0.7 | 0.815584 |
Target: 5'- aCCGCgCGUCGCGGUCgGcguaAGCGCcgUAg -3' miRNA: 3'- aGGUG-GCAGUGCCAGgC----UCGUGuaGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 70177 | 0.68 | 0.908949 |
Target: 5'- gUCCACuCGUUGCGGUgguacaCCG-GCAgGUCGg -3' miRNA: 3'- -AGGUG-GCAGUGCCA------GGCuCGUgUAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 223022 | 0.68 | 0.902984 |
Target: 5'- gUCCGCCGgucgCACGG-CC-AGCACGcCGa -3' miRNA: 3'- -AGGUGGCa---GUGCCaGGcUCGUGUaGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 148912 | 0.68 | 0.896802 |
Target: 5'- -gCGCCGcCGCGGcaUCGAGCACcgCAg -3' miRNA: 3'- agGUGGCaGUGCCa-GGCUCGUGuaGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 133376 | 0.68 | 0.896802 |
Target: 5'- gUCCGCCGgcacagCgcgGCGGUCCGcGCuuucGCGUCGg -3' miRNA: 3'- -AGGUGGCa-----G---UGCCAGGCuCG----UGUAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 63487 | 0.68 | 0.896802 |
Target: 5'- cUCCAgCGUCcUGGaCCGGGCGCugAUCGa -3' miRNA: 3'- -AGGUgGCAGuGCCaGGCUCGUG--UAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 55027 | 0.68 | 0.896802 |
Target: 5'- gCCAgCGUCgGCGGcUCCGAGagaCGCGUCu -3' miRNA: 3'- aGGUgGCAG-UGCC-AGGCUC---GUGUAGu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 193199 | 0.68 | 0.889754 |
Target: 5'- gCCGCCGUCACGG-CCGccuggacgauggcGGCcaaGUCGg -3' miRNA: 3'- aGGUGGCAGUGCCaGGC-------------UCGug-UAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 31823 | 0.69 | 0.883797 |
Target: 5'- -gCGCCGUCuCGGcCCGGGCGCc--- -3' miRNA: 3'- agGUGGCAGuGCCaGGCUCGUGuagu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 40485 | 0.69 | 0.876982 |
Target: 5'- gUCCGCggcgCGcCACGGcgCCGcAGCGCAUCu -3' miRNA: 3'- -AGGUG----GCaGUGCCa-GGC-UCGUGUAGu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 48597 | 0.69 | 0.869963 |
Target: 5'- cCCGCUGUCAC--UCCGuGCACcGUCAg -3' miRNA: 3'- aGGUGGCAGUGccAGGCuCGUG-UAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 45644 | 0.69 | 0.862745 |
Target: 5'- gCCGCCGgcuccgCGgGGUCCGGcGCACAc-- -3' miRNA: 3'- aGGUGGCa-----GUgCCAGGCU-CGUGUagu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 164458 | 0.69 | 0.860542 |
Target: 5'- gCgGCCGUCACGGUcgccgcugccgccgCCGcAGC-CGUCAc -3' miRNA: 3'- aGgUGGCAGUGCCA--------------GGC-UCGuGUAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 166595 | 0.7 | 0.831998 |
Target: 5'- gUCCACCGUCACGGcgCCGAcgGCcuGCu--- -3' miRNA: 3'- -AGGUGGCAGUGCCa-GGCU--CG--UGuagu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 200094 | 0.66 | 0.966518 |
Target: 5'- gUCUACaGUUuauCGGUCuCGAGCGCcgCGa -3' miRNA: 3'- -AGGUGgCAGu--GCCAG-GCUCGUGuaGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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