miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14282 5' -56.1 NC_003521.1 + 75404 0.67 0.935459
Target:  5'- gUCCugUGUCACaccGUCuCGGGCagcaGCGUCAa -3'
miRNA:   3'- -AGGugGCAGUGc--CAG-GCUCG----UGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 73383 0.67 0.925521
Target:  5'- cUCAUCGUCAU-GUCCGAGUuCAUCc -3'
miRNA:   3'- aGGUGGCAGUGcCAGGCUCGuGUAGu -5'
14282 5' -56.1 NC_003521.1 + 69967 0.67 0.925521
Target:  5'- cCCGCCccCGCGGagaagCCGAcGCGCGUCu -3'
miRNA:   3'- aGGUGGcaGUGCCa----GGCU-CGUGUAGu -5'
14282 5' -56.1 NC_003521.1 + 155829 0.67 0.925521
Target:  5'- gCCugCGUCAuCGGUUaccaGGGCACGg-- -3'
miRNA:   3'- aGGugGCAGU-GCCAGg---CUCGUGUagu -5'
14282 5' -56.1 NC_003521.1 + 225441 0.68 0.922366
Target:  5'- -aCGcCCGUCagGCucuuuaaaggaaaagGGUCCGAGUACGUCAc -3'
miRNA:   3'- agGU-GGCAG--UG---------------CCAGGCUCGUGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 76957 0.68 0.920219
Target:  5'- uUCCAgcaUGUCGCGG-CCGAuGCGCGUg- -3'
miRNA:   3'- -AGGUg--GCAGUGCCaGGCU-CGUGUAgu -5'
14282 5' -56.1 NC_003521.1 + 57679 0.68 0.920219
Target:  5'- -aCACCGUCugGGUCU--GCACGg-- -3'
miRNA:   3'- agGUGGCAGugCCAGGcuCGUGUagu -5'
14282 5' -56.1 NC_003521.1 + 5707 0.68 0.91693
Target:  5'- -gCGCCGUCaccgggguuauguguACGGcCCGGGCACGgcgCGu -3'
miRNA:   3'- agGUGGCAG---------------UGCCaGGCUCGUGUa--GU- -5'
14282 5' -56.1 NC_003521.1 + 52816 0.68 0.914694
Target:  5'- aCCGCCuUCACGGugaaaaUCUGcAGCACGUUg -3'
miRNA:   3'- aGGUGGcAGUGCC------AGGC-UCGUGUAGu -5'
14282 5' -56.1 NC_003521.1 + 120807 0.68 0.914694
Target:  5'- gCUGCUGUCGauGUCCGAGUccuCGUCGg -3'
miRNA:   3'- aGGUGGCAGUgcCAGGCUCGu--GUAGU- -5'
14282 5' -56.1 NC_003521.1 + 189941 0.73 0.677072
Target:  5'- aUCAUCGUCGCGGgccgCCGAGC-CGUUc -3'
miRNA:   3'- aGGUGGCAGUGCCa---GGCUCGuGUAGu -5'
14282 5' -56.1 NC_003521.1 + 27555 0.7 0.806288
Target:  5'- cUCCACCGUC---GUCCGGGCggucgacGCGUCGg -3'
miRNA:   3'- -AGGUGGCAGugcCAGGCUCG-------UGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 156217 0.71 0.771969
Target:  5'- aCCugGCCGUCACcGacgCCGAGCugGUCGa -3'
miRNA:   3'- aGG--UGGCAGUGcCa--GGCUCGugUAGU- -5'
14282 5' -56.1 NC_003521.1 + 150220 0.71 0.76195
Target:  5'- gUCCACagccugCugGGcuacaucUCCGAGCACGUCAc -3'
miRNA:   3'- -AGGUGgca---GugCC-------AGGCUCGUGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 128315 0.72 0.753655
Target:  5'- cUCCACCGUgguguagcCGCGGUCCucGGGCAgGUaCAg -3'
miRNA:   3'- -AGGUGGCA--------GUGCCAGG--CUCGUgUA-GU- -5'
14282 5' -56.1 NC_003521.1 + 110658 0.72 0.752728
Target:  5'- -gCACgGUCACGGcCCGgucggccAGCGCGUCGg -3'
miRNA:   3'- agGUGgCAGUGCCaGGC-------UCGUGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 214806 0.72 0.70627
Target:  5'- aCCGCCGUCG-GGcgCCGGGCGCggCGa -3'
miRNA:   3'- aGGUGGCAGUgCCa-GGCUCGUGuaGU- -5'
14282 5' -56.1 NC_003521.1 + 57616 0.73 0.68685
Target:  5'- --uGCCGUCGCGcUCCaGGCACGUCAc -3'
miRNA:   3'- aggUGGCAGUGCcAGGcUCGUGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 124475 0.8 0.327583
Target:  5'- gCCGCCGcgcUCGCGGUCCGucCGCGUCAg -3'
miRNA:   3'- aGGUGGC---AGUGCCAGGCucGUGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 119660 0.77 0.44502
Target:  5'- cUCCGCUuuguggauguagguGUUGCGGUCCGAGCACGaCAg -3'
miRNA:   3'- -AGGUGG--------------CAGUGCCAGGCUCGUGUaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.