miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14282 5' -56.1 NC_003521.1 + 129715 0.66 0.956456
Target:  5'- uUCUGCCGgcCGCGGcCCgucgacgcGAGCGCGUCc -3'
miRNA:   3'- -AGGUGGCa-GUGCCaGG--------CUCGUGUAGu -5'
14282 5' -56.1 NC_003521.1 + 94315 0.66 0.966518
Target:  5'- gCCGCCGUUucuGCGGgucggCCGAGgGauaAUCGa -3'
miRNA:   3'- aGGUGGCAG---UGCCa----GGCUCgUg--UAGU- -5'
14282 5' -56.1 NC_003521.1 + 190059 0.66 0.963367
Target:  5'- aCCGCCG-CGCGGUCUucacGUACGUUc -3'
miRNA:   3'- aGGUGGCaGUGCCAGGcu--CGUGUAGu -5'
14282 5' -56.1 NC_003521.1 + 203826 0.66 0.960014
Target:  5'- cUCCGCCGcgacgcccucgUCGCGGaugucgccgCCGAGCACc--- -3'
miRNA:   3'- -AGGUGGC-----------AGUGCCa--------GGCUCGUGuagu -5'
14282 5' -56.1 NC_003521.1 + 187788 0.66 0.960014
Target:  5'- gCCGCCGUCACaGcGUCUG-GUACGgcugCAc -3'
miRNA:   3'- aGGUGGCAGUG-C-CAGGCuCGUGUa---GU- -5'
14282 5' -56.1 NC_003521.1 + 69967 0.67 0.925521
Target:  5'- cCCGCCccCGCGGagaagCCGAcGCGCGUCu -3'
miRNA:   3'- aGGUGGcaGUGCCa----GGCU-CGUGUAGu -5'
14282 5' -56.1 NC_003521.1 + 75404 0.67 0.935459
Target:  5'- gUCCugUGUCACaccGUCuCGGGCagcaGCGUCAa -3'
miRNA:   3'- -AGGugGCAGUGc--CAG-GCUCG----UGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 155829 0.67 0.925521
Target:  5'- gCCugCGUCAuCGGUUaccaGGGCACGg-- -3'
miRNA:   3'- aGGugGCAGU-GCCAGg---CUCGUGUagu -5'
14282 5' -56.1 NC_003521.1 + 133540 0.67 0.946216
Target:  5'- gCCAucuCCGaCACGGUCCGAcacacacaccaggugGCGCAcaaUCAa -3'
miRNA:   3'- aGGU---GGCaGUGCCAGGCU---------------CGUGU---AGU- -5'
14282 5' -56.1 NC_003521.1 + 221779 0.67 0.940095
Target:  5'- gCCGCCGUCcucgaagcuccaGC-GUCCGcucgauaucuGGCACGUCAc -3'
miRNA:   3'- aGGUGGCAG------------UGcCAGGC----------UCGUGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 160527 0.67 0.940095
Target:  5'- aCCACCGUCACcagcacGUCgGAcGCGcCGUCGu -3'
miRNA:   3'- aGGUGGCAGUGc-----CAGgCU-CGU-GUAGU- -5'
14282 5' -56.1 NC_003521.1 + 73383 0.67 0.925521
Target:  5'- cUCAUCGUCAU-GUCCGAGUuCAUCc -3'
miRNA:   3'- aGGUGGCAGUGcCAGGCUCGuGUAGu -5'
14282 5' -56.1 NC_003521.1 + 119017 0.67 0.935459
Target:  5'- aCUACCccacCACGG-CCGAGCGCAa-- -3'
miRNA:   3'- aGGUGGca--GUGCCaGGCUCGUGUagu -5'
14282 5' -56.1 NC_003521.1 + 226843 0.67 0.935459
Target:  5'- cCCGCCGcCGCG--CCGGGCAggccCAUCAg -3'
miRNA:   3'- aGGUGGCaGUGCcaGGCUCGU----GUAGU- -5'
14282 5' -56.1 NC_003521.1 + 144033 0.67 0.940095
Target:  5'- uUCC-CCGUCucCGGUCUGcGGCGCuUCu -3'
miRNA:   3'- -AGGuGGCAGu-GCCAGGC-UCGUGuAGu -5'
14282 5' -56.1 NC_003521.1 + 204364 0.67 0.940095
Target:  5'- gUCCuuCGUCGCGGcCCaggagcGAGCGCAacUCGu -3'
miRNA:   3'- -AGGugGCAGUGCCaGG------CUCGUGU--AGU- -5'
14282 5' -56.1 NC_003521.1 + 109445 0.67 0.944079
Target:  5'- --gGCCGUgggCACGGUCUcggguauGGGCGCGUCu -3'
miRNA:   3'- aggUGGCA---GUGCCAGG-------CUCGUGUAGu -5'
14282 5' -56.1 NC_003521.1 + 146361 0.67 0.925521
Target:  5'- -gCGCCGUaCACGGggcgguUCCGGGUACAg-- -3'
miRNA:   3'- agGUGGCA-GUGCC------AGGCUCGUGUagu -5'
14282 5' -56.1 NC_003521.1 + 156851 0.67 0.948708
Target:  5'- gCCA-UGUCGCGGgucaccgaccCCGAGCACcUCAu -3'
miRNA:   3'- aGGUgGCAGUGCCa---------GGCUCGUGuAGU- -5'
14282 5' -56.1 NC_003521.1 + 171400 0.67 0.944511
Target:  5'- cUCCACCGUgGUGGUgCGcGC-CGUCAc -3'
miRNA:   3'- -AGGUGGCAgUGCCAgGCuCGuGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.