miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14282 5' -56.1 NC_003521.1 + 52190 0.66 0.952689
Target:  5'- gCCGCCGggGCGG--CGAGCuCAUCAg -3'
miRNA:   3'- aGGUGGCagUGCCagGCUCGuGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 52816 0.68 0.914694
Target:  5'- aCCGCCuUCACGGugaaaaUCUGcAGCACGUUg -3'
miRNA:   3'- aGGUGGcAGUGCC------AGGC-UCGUGUAGu -5'
14282 5' -56.1 NC_003521.1 + 55027 0.68 0.896802
Target:  5'- gCCAgCGUCgGCGGcUCCGAGagaCGCGUCu -3'
miRNA:   3'- aGGUgGCAG-UGCC-AGGCUC---GUGUAGu -5'
14282 5' -56.1 NC_003521.1 + 56329 0.66 0.966518
Target:  5'- aCCACCGaggCGCGG-CCGcgcagGGCGCA-CAc -3'
miRNA:   3'- aGGUGGCa--GUGCCaGGC-----UCGUGUaGU- -5'
14282 5' -56.1 NC_003521.1 + 56724 0.66 0.952689
Target:  5'- aUUACuCGUUcaucaGCGGUCCGAGCGCcaugGUCc -3'
miRNA:   3'- aGGUG-GCAG-----UGCCAGGCUCGUG----UAGu -5'
14282 5' -56.1 NC_003521.1 + 57616 0.73 0.68685
Target:  5'- --uGCCGUCGCGcUCCaGGCACGUCAc -3'
miRNA:   3'- aggUGGCAGUGCcAGGcUCGUGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 57679 0.68 0.920219
Target:  5'- -aCACCGUCugGGUCU--GCACGg-- -3'
miRNA:   3'- agGUGGCAGugCCAGGcuCGUGUagu -5'
14282 5' -56.1 NC_003521.1 + 63487 0.68 0.896802
Target:  5'- cUCCAgCGUCcUGGaCCGGGCGCugAUCGa -3'
miRNA:   3'- -AGGUgGCAGuGCCaGGCUCGUG--UAGU- -5'
14282 5' -56.1 NC_003521.1 + 69967 0.67 0.925521
Target:  5'- cCCGCCccCGCGGagaagCCGAcGCGCGUCu -3'
miRNA:   3'- aGGUGGcaGUGCCa----GGCU-CGUGUAGu -5'
14282 5' -56.1 NC_003521.1 + 70177 0.68 0.908949
Target:  5'- gUCCACuCGUUGCGGUgguacaCCG-GCAgGUCGg -3'
miRNA:   3'- -AGGUG-GCAGUGCCA------GGCuCGUgUAGU- -5'
14282 5' -56.1 NC_003521.1 + 73383 0.67 0.925521
Target:  5'- cUCAUCGUCAU-GUCCGAGUuCAUCc -3'
miRNA:   3'- aGGUGGCAGUGcCAGGCUCGuGUAGu -5'
14282 5' -56.1 NC_003521.1 + 75404 0.67 0.935459
Target:  5'- gUCCugUGUCACaccGUCuCGGGCagcaGCGUCAa -3'
miRNA:   3'- -AGGugGCAGUGc--CAG-GCUCG----UGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 76957 0.68 0.920219
Target:  5'- uUCCAgcaUGUCGCGG-CCGAuGCGCGUg- -3'
miRNA:   3'- -AGGUg--GCAGUGCCaGGCU-CGUGUAgu -5'
14282 5' -56.1 NC_003521.1 + 78867 0.67 0.935459
Target:  5'- aUCCGCCgGUCGauGaCCaGGCGCGUCAg -3'
miRNA:   3'- -AGGUGG-CAGUgcCaGGcUCGUGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 89537 0.7 0.815584
Target:  5'- aCCGCgCGUCGCGGUCgGcguaAGCGCcgUAg -3'
miRNA:   3'- aGGUG-GCAGUGCCAGgC----UCGUGuaGU- -5'
14282 5' -56.1 NC_003521.1 + 89635 0.66 0.956457
Target:  5'- gUgACCGUCGCGG-CCGAGgaGCAg-- -3'
miRNA:   3'- aGgUGGCAGUGCCaGGCUCg-UGUagu -5'
14282 5' -56.1 NC_003521.1 + 93820 0.74 0.598254
Target:  5'- aCCACCGU---GGUCCGGGCACggCAc -3'
miRNA:   3'- aGGUGGCAgugCCAGGCUCGUGuaGU- -5'
14282 5' -56.1 NC_003521.1 + 94315 0.66 0.966518
Target:  5'- gCCGCCGUUucuGCGGgucggCCGAGgGauaAUCGa -3'
miRNA:   3'- aGGUGGCAG---UGCCa----GGCUCgUg--UAGU- -5'
14282 5' -56.1 NC_003521.1 + 98925 0.7 0.815584
Target:  5'- gUCUGCuCGcgCACGG-CCGuGCGCAUCAc -3'
miRNA:   3'- -AGGUG-GCa-GUGCCaGGCuCGUGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 99019 0.68 0.920219
Target:  5'- gUUGCCGcUCGaGGUCCaGGCGCAUCAc -3'
miRNA:   3'- aGGUGGC-AGUgCCAGGcUCGUGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.