Results 21 - 40 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14282 | 5' | -56.1 | NC_003521.1 | + | 52190 | 0.66 | 0.952689 |
Target: 5'- gCCGCCGggGCGG--CGAGCuCAUCAg -3' miRNA: 3'- aGGUGGCagUGCCagGCUCGuGUAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 52816 | 0.68 | 0.914694 |
Target: 5'- aCCGCCuUCACGGugaaaaUCUGcAGCACGUUg -3' miRNA: 3'- aGGUGGcAGUGCC------AGGC-UCGUGUAGu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 55027 | 0.68 | 0.896802 |
Target: 5'- gCCAgCGUCgGCGGcUCCGAGagaCGCGUCu -3' miRNA: 3'- aGGUgGCAG-UGCC-AGGCUC---GUGUAGu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 56329 | 0.66 | 0.966518 |
Target: 5'- aCCACCGaggCGCGG-CCGcgcagGGCGCA-CAc -3' miRNA: 3'- aGGUGGCa--GUGCCaGGC-----UCGUGUaGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 56724 | 0.66 | 0.952689 |
Target: 5'- aUUACuCGUUcaucaGCGGUCCGAGCGCcaugGUCc -3' miRNA: 3'- aGGUG-GCAG-----UGCCAGGCUCGUG----UAGu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 57616 | 0.73 | 0.68685 |
Target: 5'- --uGCCGUCGCGcUCCaGGCACGUCAc -3' miRNA: 3'- aggUGGCAGUGCcAGGcUCGUGUAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 57679 | 0.68 | 0.920219 |
Target: 5'- -aCACCGUCugGGUCU--GCACGg-- -3' miRNA: 3'- agGUGGCAGugCCAGGcuCGUGUagu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 63487 | 0.68 | 0.896802 |
Target: 5'- cUCCAgCGUCcUGGaCCGGGCGCugAUCGa -3' miRNA: 3'- -AGGUgGCAGuGCCaGGCUCGUG--UAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 69967 | 0.67 | 0.925521 |
Target: 5'- cCCGCCccCGCGGagaagCCGAcGCGCGUCu -3' miRNA: 3'- aGGUGGcaGUGCCa----GGCU-CGUGUAGu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 70177 | 0.68 | 0.908949 |
Target: 5'- gUCCACuCGUUGCGGUgguacaCCG-GCAgGUCGg -3' miRNA: 3'- -AGGUG-GCAGUGCCA------GGCuCGUgUAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 73383 | 0.67 | 0.925521 |
Target: 5'- cUCAUCGUCAU-GUCCGAGUuCAUCc -3' miRNA: 3'- aGGUGGCAGUGcCAGGCUCGuGUAGu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 75404 | 0.67 | 0.935459 |
Target: 5'- gUCCugUGUCACaccGUCuCGGGCagcaGCGUCAa -3' miRNA: 3'- -AGGugGCAGUGc--CAG-GCUCG----UGUAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 76957 | 0.68 | 0.920219 |
Target: 5'- uUCCAgcaUGUCGCGG-CCGAuGCGCGUg- -3' miRNA: 3'- -AGGUg--GCAGUGCCaGGCU-CGUGUAgu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 78867 | 0.67 | 0.935459 |
Target: 5'- aUCCGCCgGUCGauGaCCaGGCGCGUCAg -3' miRNA: 3'- -AGGUGG-CAGUgcCaGGcUCGUGUAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 89537 | 0.7 | 0.815584 |
Target: 5'- aCCGCgCGUCGCGGUCgGcguaAGCGCcgUAg -3' miRNA: 3'- aGGUG-GCAGUGCCAGgC----UCGUGuaGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 89635 | 0.66 | 0.956457 |
Target: 5'- gUgACCGUCGCGG-CCGAGgaGCAg-- -3' miRNA: 3'- aGgUGGCAGUGCCaGGCUCg-UGUagu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 93820 | 0.74 | 0.598254 |
Target: 5'- aCCACCGU---GGUCCGGGCACggCAc -3' miRNA: 3'- aGGUGGCAgugCCAGGCUCGUGuaGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 94315 | 0.66 | 0.966518 |
Target: 5'- gCCGCCGUUucuGCGGgucggCCGAGgGauaAUCGa -3' miRNA: 3'- aGGUGGCAG---UGCCa----GGCUCgUg--UAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 98925 | 0.7 | 0.815584 |
Target: 5'- gUCUGCuCGcgCACGG-CCGuGCGCAUCAc -3' miRNA: 3'- -AGGUG-GCa-GUGCCaGGCuCGUGUAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 99019 | 0.68 | 0.920219 |
Target: 5'- gUUGCCGcUCGaGGUCCaGGCGCAUCAc -3' miRNA: 3'- aGGUGGC-AGUgCCAGGcUCGUGUAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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