Results 21 - 40 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14282 | 5' | -56.1 | NC_003521.1 | + | 13473 | 0.71 | 0.78982 |
Target: 5'- -gCGCCGUCgACGGUCUGGGCgACGg-- -3' miRNA: 3'- agGUGGCAG-UGCCAGGCUCG-UGUagu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 168845 | 0.71 | 0.78982 |
Target: 5'- gCUGCgCGUCACGGacgCCGGGCuCAUCu -3' miRNA: 3'- aGGUG-GCAGUGCCa--GGCUCGuGUAGu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 27555 | 0.7 | 0.806288 |
Target: 5'- cUCCACCGUC---GUCCGGGCggucgacGCGUCGg -3' miRNA: 3'- -AGGUGGCAGugcCAGGCUCG-------UGUAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 102941 | 0.7 | 0.807141 |
Target: 5'- gCCGaggCGUCGCGGUCCaGGCGC-UCGg -3' miRNA: 3'- aGGUg--GCAGUGCCAGGcUCGUGuAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 137492 | 0.7 | 0.807141 |
Target: 5'- cCUACCG-CACGGcgCUG-GCGCGUCAg -3' miRNA: 3'- aGGUGGCaGUGCCa-GGCuCGUGUAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 98925 | 0.7 | 0.815584 |
Target: 5'- gUCUGCuCGcgCACGG-CCGuGCGCAUCAc -3' miRNA: 3'- -AGGUG-GCa-GUGCCaGGCuCGUGUAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 135036 | 0.7 | 0.815584 |
Target: 5'- gCCugCGUCACGGUgguuaacgccUCGGGCACcaccGUCu -3' miRNA: 3'- aGGugGCAGUGCCA----------GGCUCGUG----UAGu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 89537 | 0.7 | 0.815584 |
Target: 5'- aCCGCgCGUCGCGGUCgGcguaAGCGCcgUAg -3' miRNA: 3'- aGGUG-GCAGUGCCAGgC----UCGUGuaGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 214025 | 0.7 | 0.823872 |
Target: 5'- -aCGCCGUUcccauaccuGCGGUggccccCCGAGCGCGUCc -3' miRNA: 3'- agGUGGCAG---------UGCCA------GGCUCGUGUAGu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 166595 | 0.7 | 0.831998 |
Target: 5'- gUCCACCGUCACGGcgCCGAcgGCcuGCu--- -3' miRNA: 3'- -AGGUGGCAGUGCCa-GGCU--CG--UGuagu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 174049 | 0.7 | 0.831998 |
Target: 5'- aCCGuCCGUCugGG-CCG-GCgGCAUCAc -3' miRNA: 3'- aGGU-GGCAGugCCaGGCuCG-UGUAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 48109 | 0.7 | 0.839955 |
Target: 5'- aCCACCGcuaUCGCGGgaCGAGCGCGa-- -3' miRNA: 3'- aGGUGGC---AGUGCCagGCUCGUGUagu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 47437 | 0.7 | 0.839955 |
Target: 5'- gUCCACCGagAaaccCGcGUCCaaGAGCACGUCGg -3' miRNA: 3'- -AGGUGGCagU----GC-CAGG--CUCGUGUAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 166139 | 0.7 | 0.839955 |
Target: 5'- gCCGCCGUCgcugcugcuuGCGGUagagCGAGCGCAg-- -3' miRNA: 3'- aGGUGGCAG----------UGCCAg---GCUCGUGUagu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 164458 | 0.69 | 0.860542 |
Target: 5'- gCgGCCGUCACGGUcgccgcugccgccgCCGcAGC-CGUCAc -3' miRNA: 3'- aGgUGGCAGUGCCA--------------GGC-UCGuGUAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 45644 | 0.69 | 0.862745 |
Target: 5'- gCCGCCGgcuccgCGgGGUCCGGcGCACAc-- -3' miRNA: 3'- aGGUGGCa-----GUgCCAGGCU-CGUGUagu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 204530 | 0.69 | 0.869963 |
Target: 5'- cCCGuagUUGUCGCGGUCCGAgguGCGCAg-- -3' miRNA: 3'- aGGU---GGCAGUGCCAGGCU---CGUGUagu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 48597 | 0.69 | 0.869963 |
Target: 5'- cCCGCUGUCAC--UCCGuGCACcGUCAg -3' miRNA: 3'- aGGUGGCAGUGccAGGCuCGUG-UAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 40485 | 0.69 | 0.876982 |
Target: 5'- gUCCGCggcgCGcCACGGcgCCGcAGCGCAUCu -3' miRNA: 3'- -AGGUG----GCaGUGCCa-GGC-UCGUGUAGu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 4363 | 0.69 | 0.876982 |
Target: 5'- gUUCGCCGcUUGCGG-CCGAGCAgGUUc -3' miRNA: 3'- -AGGUGGC-AGUGCCaGGCUCGUgUAGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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