miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14282 5' -56.1 NC_003521.1 + 3657 0.66 0.956089
Target:  5'- gCCGCCGUCugccucgGCGG-CCGGGacccuCGUCGg -3'
miRNA:   3'- aGGUGGCAG-------UGCCaGGCUCgu---GUAGU- -5'
14282 5' -56.1 NC_003521.1 + 4363 0.69 0.876982
Target:  5'- gUUCGCCGcUUGCGG-CCGAGCAgGUUc -3'
miRNA:   3'- -AGGUGGC-AGUGCCaGGCUCGUgUAGu -5'
14282 5' -56.1 NC_003521.1 + 5707 0.68 0.91693
Target:  5'- -gCGCCGUCaccgggguuauguguACGGcCCGGGCACGgcgCGu -3'
miRNA:   3'- agGUGGCAG---------------UGCCaGGCUCGUGUa--GU- -5'
14282 5' -56.1 NC_003521.1 + 8558 1.06 0.008289
Target:  5'- aUCCACCGUCACGGUCCGAGCACAUCc -3'
miRNA:   3'- -AGGUGGCAGUGCCAGGCUCGUGUAGu -5'
14282 5' -56.1 NC_003521.1 + 13473 0.71 0.78982
Target:  5'- -gCGCCGUCgACGGUCUGGGCgACGg-- -3'
miRNA:   3'- agGUGGCAG-UGCCAGGCUCG-UGUagu -5'
14282 5' -56.1 NC_003521.1 + 14115 0.72 0.70627
Target:  5'- gCCugUGUCugGGUCCGccgaagggcuGGCACGUg- -3'
miRNA:   3'- aGGugGCAGugCCAGGC----------UCGUGUAgu -5'
14282 5' -56.1 NC_003521.1 + 14531 0.71 0.775579
Target:  5'- aCCACgcccgagggcucguaCGcCACGG-CCGAGCGCAUCc -3'
miRNA:   3'- aGGUG---------------GCaGUGCCaGGCUCGUGUAGu -5'
14282 5' -56.1 NC_003521.1 + 18539 0.66 0.963367
Target:  5'- -aCGCUGgCACGGggcUCUGGGCACcAUCAc -3'
miRNA:   3'- agGUGGCaGUGCC---AGGCUCGUG-UAGU- -5'
14282 5' -56.1 NC_003521.1 + 21095 0.66 0.960015
Target:  5'- cCCGCgaCGgCGCGGUCCcuccgcGCACGUCAc -3'
miRNA:   3'- aGGUG--GCaGUGCCAGGcu----CGUGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 27555 0.7 0.806288
Target:  5'- cUCCACCGUC---GUCCGGGCggucgacGCGUCGg -3'
miRNA:   3'- -AGGUGGCAGugcCAGGCUCG-------UGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 31270 0.71 0.770158
Target:  5'- gCCACCGUCGCcgccaccccgCCGGGCGCAUa- -3'
miRNA:   3'- aGGUGGCAGUGcca-------GGCUCGUGUAgu -5'
14282 5' -56.1 NC_003521.1 + 31823 0.69 0.883797
Target:  5'- -gCGCCGUCuCGGcCCGGGCGCc--- -3'
miRNA:   3'- agGUGGCAGuGCCaGGCUCGUGuagu -5'
14282 5' -56.1 NC_003521.1 + 36938 0.73 0.647566
Target:  5'- aCUGCCGUCAUGGgcCCGAcGCugGUCGu -3'
miRNA:   3'- aGGUGGCAGUGCCa-GGCU-CGugUAGU- -5'
14282 5' -56.1 NC_003521.1 + 40485 0.69 0.876982
Target:  5'- gUCCGCggcgCGcCACGGcgCCGcAGCGCAUCu -3'
miRNA:   3'- -AGGUG----GCaGUGCCa-GGC-UCGUGUAGu -5'
14282 5' -56.1 NC_003521.1 + 45644 0.69 0.862745
Target:  5'- gCCGCCGgcuccgCGgGGUCCGGcGCACAc-- -3'
miRNA:   3'- aGGUGGCa-----GUgCCAGGCU-CGUGUagu -5'
14282 5' -56.1 NC_003521.1 + 47437 0.7 0.839955
Target:  5'- gUCCACCGagAaaccCGcGUCCaaGAGCACGUCGg -3'
miRNA:   3'- -AGGUGGCagU----GC-CAGG--CUCGUGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 47949 0.72 0.753655
Target:  5'- aCCGCCGUCGCGcUCgGAaGCACAagUCGc -3'
miRNA:   3'- aGGUGGCAGUGCcAGgCU-CGUGU--AGU- -5'
14282 5' -56.1 NC_003521.1 + 48109 0.7 0.839955
Target:  5'- aCCACCGcuaUCGCGGgaCGAGCGCGa-- -3'
miRNA:   3'- aGGUGGC---AGUGCCagGCUCGUGUagu -5'
14282 5' -56.1 NC_003521.1 + 48597 0.69 0.869963
Target:  5'- cCCGCUGUCAC--UCCGuGCACcGUCAg -3'
miRNA:   3'- aGGUGGCAGUGccAGGCuCGUG-UAGU- -5'
14282 5' -56.1 NC_003521.1 + 50193 0.66 0.956089
Target:  5'- cUCCGCCuccuGUC-CGGUCCgcccgaaGAGCGCgaagGUCAg -3'
miRNA:   3'- -AGGUGG----CAGuGCCAGG-------CUCGUG----UAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.