miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14282 5' -56.1 NC_003521.1 + 235147 0.66 0.960014
Target:  5'- aUCGCCacCACGGacUCCGAGCGCGa-- -3'
miRNA:   3'- aGGUGGcaGUGCC--AGGCUCGUGUagu -5'
14282 5' -56.1 NC_003521.1 + 232294 0.76 0.520848
Target:  5'- gUCgCGCC--CACGGUCCGGGCACAaUCAa -3'
miRNA:   3'- -AG-GUGGcaGUGCCAGGCUCGUGU-AGU- -5'
14282 5' -56.1 NC_003521.1 + 226843 0.67 0.935459
Target:  5'- cCCGCCGcCGCG--CCGGGCAggccCAUCAg -3'
miRNA:   3'- aGGUGGCaGUGCcaGGCUCGU----GUAGU- -5'
14282 5' -56.1 NC_003521.1 + 225441 0.68 0.922366
Target:  5'- -aCGcCCGUCagGCucuuuaaaggaaaagGGUCCGAGUACGUCAc -3'
miRNA:   3'- agGU-GGCAG--UG---------------CCAGGCUCGUGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 223477 0.68 0.908949
Target:  5'- gCCGgCGUCACGGcCCGggagguggGGCGgAUCGg -3'
miRNA:   3'- aGGUgGCAGUGCCaGGC--------UCGUgUAGU- -5'
14282 5' -56.1 NC_003521.1 + 223022 0.68 0.902984
Target:  5'- gUCCGCCGgucgCACGG-CC-AGCACGcCGa -3'
miRNA:   3'- -AGGUGGCa---GUGCCaGGcUCGUGUaGU- -5'
14282 5' -56.1 NC_003521.1 + 221779 0.67 0.940095
Target:  5'- gCCGCCGUCcucgaagcuccaGC-GUCCGcucgauaucuGGCACGUCAc -3'
miRNA:   3'- aGGUGGCAG------------UGcCAGGC----------UCGUGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 220189 0.78 0.38855
Target:  5'- cCCACCagcgCGCGGcucUCCGAGCACAUCu -3'
miRNA:   3'- aGGUGGca--GUGCC---AGGCUCGUGUAGu -5'
14282 5' -56.1 NC_003521.1 + 218671 0.68 0.908949
Target:  5'- cUCCACCGUCuccCGGUaaGAGgGCggCGg -3'
miRNA:   3'- -AGGUGGCAGu--GCCAggCUCgUGuaGU- -5'
14282 5' -56.1 NC_003521.1 + 218245 0.68 0.902984
Target:  5'- --gGCCGUCACgGGUgCGA-CGCGUCAg -3'
miRNA:   3'- aggUGGCAGUG-CCAgGCUcGUGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 217564 0.66 0.963367
Target:  5'- gUCGCCGUCAUGG-CgGAGauCAUCAg -3'
miRNA:   3'- aGGUGGCAGUGCCaGgCUCguGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 214806 0.72 0.70627
Target:  5'- aCCGCCGUCG-GGcgCCGGGCGCggCGa -3'
miRNA:   3'- aGGUGGCAGUgCCa-GGCUCGUGuaGU- -5'
14282 5' -56.1 NC_003521.1 + 214025 0.7 0.823872
Target:  5'- -aCGCCGUUcccauaccuGCGGUggccccCCGAGCGCGUCc -3'
miRNA:   3'- agGUGGCAG---------UGCCA------GGCUCGUGUAGu -5'
14282 5' -56.1 NC_003521.1 + 209548 0.72 0.753655
Target:  5'- gCCgggaACUGUCGCGGuUCCGcaAGCACGUCc -3'
miRNA:   3'- aGG----UGGCAGUGCC-AGGC--UCGUGUAGu -5'
14282 5' -56.1 NC_003521.1 + 204530 0.69 0.869963
Target:  5'- cCCGuagUUGUCGCGGUCCGAgguGCGCAg-- -3'
miRNA:   3'- aGGU---GGCAGUGCCAGGCU---CGUGUagu -5'
14282 5' -56.1 NC_003521.1 + 204364 0.67 0.940095
Target:  5'- gUCCuuCGUCGCGGcCCaggagcGAGCGCAacUCGu -3'
miRNA:   3'- -AGGugGCAGUGCCaGG------CUCGUGU--AGU- -5'
14282 5' -56.1 NC_003521.1 + 204023 0.76 0.530341
Target:  5'- gUCCGCCGUCcgcgaGCGGcUCCGcAGCGCGUg- -3'
miRNA:   3'- -AGGUGGCAG-----UGCC-AGGC-UCGUGUAgu -5'
14282 5' -56.1 NC_003521.1 + 203826 0.66 0.960014
Target:  5'- cUCCGCCGcgacgcccucgUCGCGGaugucgccgCCGAGCACc--- -3'
miRNA:   3'- -AGGUGGC-----------AGUGCCa--------GGCUCGUGuagu -5'
14282 5' -56.1 NC_003521.1 + 200094 0.66 0.966518
Target:  5'- gUCUACaGUUuauCGGUCuCGAGCGCcgCGa -3'
miRNA:   3'- -AGGUGgCAGu--GCCAG-GCUCGUGuaGU- -5'
14282 5' -56.1 NC_003521.1 + 193323 0.66 0.952689
Target:  5'- aCgGCUGcaUCGCGGUCCGGGCcgaggACuUCAa -3'
miRNA:   3'- aGgUGGC--AGUGCCAGGCUCG-----UGuAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.