miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14282 5' -56.1 NC_003521.1 + 31823 0.69 0.883797
Target:  5'- -gCGCCGUCuCGGcCCGGGCGCc--- -3'
miRNA:   3'- agGUGGCAGuGCCaGGCUCGUGuagu -5'
14282 5' -56.1 NC_003521.1 + 156217 0.71 0.771969
Target:  5'- aCCugGCCGUCACcGacgCCGAGCugGUCGa -3'
miRNA:   3'- aGG--UGGCAGUGcCa--GGCUCGugUAGU- -5'
14282 5' -56.1 NC_003521.1 + 27555 0.7 0.806288
Target:  5'- cUCCACCGUC---GUCCGGGCggucgacGCGUCGg -3'
miRNA:   3'- -AGGUGGCAGugcCAGGCUCG-------UGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 89537 0.7 0.815584
Target:  5'- aCCGCgCGUCGCGGUCgGcguaAGCGCcgUAg -3'
miRNA:   3'- aGGUG-GCAGUGCCAGgC----UCGUGuaGU- -5'
14282 5' -56.1 NC_003521.1 + 166595 0.7 0.831998
Target:  5'- gUCCACCGUCACGGcgCCGAcgGCcuGCu--- -3'
miRNA:   3'- -AGGUGGCAGUGCCa-GGCU--CG--UGuagu -5'
14282 5' -56.1 NC_003521.1 + 164458 0.69 0.860542
Target:  5'- gCgGCCGUCACGGUcgccgcugccgccgCCGcAGC-CGUCAc -3'
miRNA:   3'- aGgUGGCAGUGCCA--------------GGC-UCGuGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 45644 0.69 0.862745
Target:  5'- gCCGCCGgcuccgCGgGGUCCGGcGCACAc-- -3'
miRNA:   3'- aGGUGGCa-----GUgCCAGGCU-CGUGUagu -5'
14282 5' -56.1 NC_003521.1 + 48597 0.69 0.869963
Target:  5'- cCCGCUGUCAC--UCCGuGCACcGUCAg -3'
miRNA:   3'- aGGUGGCAGUGccAGGCuCGUG-UAGU- -5'
14282 5' -56.1 NC_003521.1 + 40485 0.69 0.876982
Target:  5'- gUCCGCggcgCGcCACGGcgCCGcAGCGCAUCu -3'
miRNA:   3'- -AGGUG----GCaGUGCCa-GGC-UCGUGUAGu -5'
14282 5' -56.1 NC_003521.1 + 150220 0.71 0.76195
Target:  5'- gUCCACagccugCugGGcuacaucUCCGAGCACGUCAc -3'
miRNA:   3'- -AGGUGgca---GugCC-------AGGCUCGUGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 128315 0.72 0.753655
Target:  5'- cUCCACCGUgguguagcCGCGGUCCucGGGCAgGUaCAg -3'
miRNA:   3'- -AGGUGGCA--------GUGCCAGG--CUCGUgUA-GU- -5'
14282 5' -56.1 NC_003521.1 + 110658 0.72 0.752728
Target:  5'- -gCACgGUCACGGcCCGgucggccAGCGCGUCGg -3'
miRNA:   3'- agGUGgCAGUGCCaGGC-------UCGUGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 220189 0.78 0.38855
Target:  5'- cCCACCagcgCGCGGcucUCCGAGCACAUCu -3'
miRNA:   3'- aGGUGGca--GUGCC---AGGCUCGUGUAGu -5'
14282 5' -56.1 NC_003521.1 + 119660 0.77 0.44502
Target:  5'- cUCCGCUuuguggauguagguGUUGCGGUCCGAGCACGaCAg -3'
miRNA:   3'- -AGGUGG--------------CAGUGCCAGGCUCGUGUaGU- -5'
14282 5' -56.1 NC_003521.1 + 232294 0.76 0.520848
Target:  5'- gUCgCGCC--CACGGUCCGGGCACAaUCAa -3'
miRNA:   3'- -AG-GUGGcaGUGCCAGGCUCGUGU-AGU- -5'
14282 5' -56.1 NC_003521.1 + 204023 0.76 0.530341
Target:  5'- gUCCGCCGUCcgcgaGCGGcUCCGcAGCGCGUg- -3'
miRNA:   3'- -AGGUGGCAG-----UGCC-AGGC-UCGUGUAgu -5'
14282 5' -56.1 NC_003521.1 + 93820 0.74 0.598254
Target:  5'- aCCACCGU---GGUCCGGGCACggCAc -3'
miRNA:   3'- aGGUGGCAgugCCAGGCUCGUGuaGU- -5'
14282 5' -56.1 NC_003521.1 + 189941 0.73 0.677072
Target:  5'- aUCAUCGUCGCGGgccgCCGAGC-CGUUc -3'
miRNA:   3'- aGGUGGCAGUGCCa---GGCUCGuGUAGu -5'
14282 5' -56.1 NC_003521.1 + 57616 0.73 0.68685
Target:  5'- --uGCCGUCGCGcUCCaGGCACGUCAc -3'
miRNA:   3'- aggUGGCAGUGCcAGGcUCGUGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 214806 0.72 0.70627
Target:  5'- aCCGCCGUCG-GGcgCCGGGCGCggCGa -3'
miRNA:   3'- aGGUGGCAGUgCCa-GGCUCGUGuaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.