Results 1 - 20 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14282 | 5' | -56.1 | NC_003521.1 | + | 220189 | 0.78 | 0.38855 |
Target: 5'- cCCACCagcgCGCGGcucUCCGAGCACAUCu -3' miRNA: 3'- aGGUGGca--GUGCC---AGGCUCGUGUAGu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 40485 | 0.69 | 0.876982 |
Target: 5'- gUCCGCggcgCGcCACGGcgCCGcAGCGCAUCu -3' miRNA: 3'- -AGGUG----GCaGUGCCa-GGC-UCGUGUAGu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 48597 | 0.69 | 0.869963 |
Target: 5'- cCCGCUGUCAC--UCCGuGCACcGUCAg -3' miRNA: 3'- aGGUGGCAGUGccAGGCuCGUG-UAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 45644 | 0.69 | 0.862745 |
Target: 5'- gCCGCCGgcuccgCGgGGUCCGGcGCACAc-- -3' miRNA: 3'- aGGUGGCa-----GUgCCAGGCU-CGUGUagu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 164458 | 0.69 | 0.860542 |
Target: 5'- gCgGCCGUCACGGUcgccgcugccgccgCCGcAGC-CGUCAc -3' miRNA: 3'- aGgUGGCAGUGCCA--------------GGC-UCGuGUAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 166595 | 0.7 | 0.831998 |
Target: 5'- gUCCACCGUCACGGcgCCGAcgGCcuGCu--- -3' miRNA: 3'- -AGGUGGCAGUGCCa-GGCU--CG--UGuagu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 89537 | 0.7 | 0.815584 |
Target: 5'- aCCGCgCGUCGCGGUCgGcguaAGCGCcgUAg -3' miRNA: 3'- aGGUG-GCAGUGCCAGgC----UCGUGuaGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 27555 | 0.7 | 0.806288 |
Target: 5'- cUCCACCGUC---GUCCGGGCggucgacGCGUCGg -3' miRNA: 3'- -AGGUGGCAGugcCAGGCUCG-------UGUAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 156217 | 0.71 | 0.771969 |
Target: 5'- aCCugGCCGUCACcGacgCCGAGCugGUCGa -3' miRNA: 3'- aGG--UGGCAGUGcCa--GGCUCGugUAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 150220 | 0.71 | 0.76195 |
Target: 5'- gUCCACagccugCugGGcuacaucUCCGAGCACGUCAc -3' miRNA: 3'- -AGGUGgca---GugCC-------AGGCUCGUGUAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 128315 | 0.72 | 0.753655 |
Target: 5'- cUCCACCGUgguguagcCGCGGUCCucGGGCAgGUaCAg -3' miRNA: 3'- -AGGUGGCA--------GUGCCAGG--CUCGUgUA-GU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 110658 | 0.72 | 0.752728 |
Target: 5'- -gCACgGUCACGGcCCGgucggccAGCGCGUCGg -3' miRNA: 3'- agGUGgCAGUGCCaGGC-------UCGUGUAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 214806 | 0.72 | 0.70627 |
Target: 5'- aCCGCCGUCG-GGcgCCGGGCGCggCGa -3' miRNA: 3'- aGGUGGCAGUgCCa-GGCUCGUGuaGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 57616 | 0.73 | 0.68685 |
Target: 5'- --uGCCGUCGCGcUCCaGGCACGUCAc -3' miRNA: 3'- aggUGGCAGUGCcAGGcUCGUGUAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 189941 | 0.73 | 0.677072 |
Target: 5'- aUCAUCGUCGCGGgccgCCGAGC-CGUUc -3' miRNA: 3'- aGGUGGCAGUGCCa---GGCUCGuGUAGu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 93820 | 0.74 | 0.598254 |
Target: 5'- aCCACCGU---GGUCCGGGCACggCAc -3' miRNA: 3'- aGGUGGCAgugCCAGGCUCGUGuaGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 204023 | 0.76 | 0.530341 |
Target: 5'- gUCCGCCGUCcgcgaGCGGcUCCGcAGCGCGUg- -3' miRNA: 3'- -AGGUGGCAG-----UGCC-AGGC-UCGUGUAgu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 232294 | 0.76 | 0.520848 |
Target: 5'- gUCgCGCC--CACGGUCCGGGCACAaUCAa -3' miRNA: 3'- -AG-GUGGcaGUGCCAGGCUCGUGU-AGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 119660 | 0.77 | 0.44502 |
Target: 5'- cUCCGCUuuguggauguagguGUUGCGGUCCGAGCACGaCAg -3' miRNA: 3'- -AGGUGG--------------CAGUGCCAGGCUCGUGUaGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 124475 | 0.8 | 0.327583 |
Target: 5'- gCCGCCGcgcUCGCGGUCCGucCGCGUCAg -3' miRNA: 3'- aGGUGGC---AGUGCCAGGCucGUGUAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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