miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14282 5' -56.1 NC_003521.1 + 8558 1.06 0.008289
Target:  5'- aUCCACCGUCACGGUCCGAGCACAUCc -3'
miRNA:   3'- -AGGUGGCAGUGCCAGGCUCGUGUAGu -5'
14282 5' -56.1 NC_003521.1 + 166139 0.7 0.839955
Target:  5'- gCCGCCGUCgcugcugcuuGCGGUagagCGAGCGCAg-- -3'
miRNA:   3'- aGGUGGCAG----------UGCCAg---GCUCGUGUagu -5'
14282 5' -56.1 NC_003521.1 + 4363 0.69 0.876982
Target:  5'- gUUCGCCGcUUGCGG-CCGAGCAgGUUc -3'
miRNA:   3'- -AGGUGGC-AGUGCCaGGCUCGUgUAGu -5'
14282 5' -56.1 NC_003521.1 + 200094 0.66 0.966518
Target:  5'- gUCUACaGUUuauCGGUCuCGAGCGCcgCGa -3'
miRNA:   3'- -AGGUGgCAGu--GCCAG-GCUCGUGuaGU- -5'
14282 5' -56.1 NC_003521.1 + 47949 0.72 0.753655
Target:  5'- aCCGCCGUCGCGcUCgGAaGCACAagUCGc -3'
miRNA:   3'- aGGUGGCAGUGCcAGgCU-CGUGU--AGU- -5'
14282 5' -56.1 NC_003521.1 + 31270 0.71 0.770158
Target:  5'- gCCACCGUCGCcgccaccccgCCGGGCGCAUa- -3'
miRNA:   3'- aGGUGGCAGUGcca-------GGCUCGUGUAgu -5'
14282 5' -56.1 NC_003521.1 + 168845 0.71 0.78982
Target:  5'- gCUGCgCGUCACGGacgCCGGGCuCAUCu -3'
miRNA:   3'- aGGUG-GCAGUGCCa--GGCUCGuGUAGu -5'
14282 5' -56.1 NC_003521.1 + 13473 0.71 0.78982
Target:  5'- -gCGCCGUCgACGGUCUGGGCgACGg-- -3'
miRNA:   3'- agGUGGCAG-UGCCAGGCUCG-UGUagu -5'
14282 5' -56.1 NC_003521.1 + 98925 0.7 0.815584
Target:  5'- gUCUGCuCGcgCACGG-CCGuGCGCAUCAc -3'
miRNA:   3'- -AGGUG-GCa-GUGCCaGGCuCGUGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 47437 0.7 0.839955
Target:  5'- gUCCACCGagAaaccCGcGUCCaaGAGCACGUCGg -3'
miRNA:   3'- -AGGUGGCagU----GC-CAGG--CUCGUGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 214025 0.7 0.823872
Target:  5'- -aCGCCGUUcccauaccuGCGGUggccccCCGAGCGCGUCc -3'
miRNA:   3'- agGUGGCAG---------UGCCA------GGCUCGUGUAGu -5'
14282 5' -56.1 NC_003521.1 + 102941 0.7 0.807141
Target:  5'- gCCGaggCGUCGCGGUCCaGGCGC-UCGg -3'
miRNA:   3'- aGGUg--GCAGUGCCAGGcUCGUGuAGU- -5'
14282 5' -56.1 NC_003521.1 + 36938 0.73 0.647566
Target:  5'- aCUGCCGUCAUGGgcCCGAcGCugGUCGu -3'
miRNA:   3'- aGGUGGCAGUGCCa-GGCU-CGugUAGU- -5'
14282 5' -56.1 NC_003521.1 + 174049 0.7 0.831998
Target:  5'- aCCGuCCGUCugGG-CCG-GCgGCAUCAc -3'
miRNA:   3'- aGGU-GGCAGugCCaGGCuCG-UGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 14115 0.72 0.70627
Target:  5'- gCCugUGUCugGGUCCGccgaagggcuGGCACGUg- -3'
miRNA:   3'- aGGugGCAGugCCAGGC----------UCGUGUAgu -5'
14282 5' -56.1 NC_003521.1 + 137492 0.7 0.807141
Target:  5'- cCUACCG-CACGGcgCUG-GCGCGUCAg -3'
miRNA:   3'- aGGUGGCaGUGCCa-GGCuCGUGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 48109 0.7 0.839955
Target:  5'- aCCACCGcuaUCGCGGgaCGAGCGCGa-- -3'
miRNA:   3'- aGGUGGC---AGUGCCagGCUCGUGUagu -5'
14282 5' -56.1 NC_003521.1 + 204530 0.69 0.869963
Target:  5'- cCCGuagUUGUCGCGGUCCGAgguGCGCAg-- -3'
miRNA:   3'- aGGU---GGCAGUGCCAGGCU---CGUGUagu -5'
14282 5' -56.1 NC_003521.1 + 209548 0.72 0.753655
Target:  5'- gCCgggaACUGUCGCGGuUCCGcaAGCACGUCc -3'
miRNA:   3'- aGG----UGGCAGUGCC-AGGC--UCGUGUAGu -5'
14282 5' -56.1 NC_003521.1 + 14531 0.71 0.775579
Target:  5'- aCCACgcccgagggcucguaCGcCACGG-CCGAGCGCAUCc -3'
miRNA:   3'- aGGUG---------------GCaGUGCCaGGCUCGUGUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.