Results 21 - 40 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14282 | 5' | -56.1 | NC_003521.1 | + | 128788 | 0.68 | 0.908949 |
Target: 5'- gUCGCaGUaCGCGGUCgGGGCACcgCAg -3' miRNA: 3'- aGGUGgCA-GUGCCAGgCUCGUGuaGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 4363 | 0.69 | 0.876982 |
Target: 5'- gUUCGCCGcUUGCGG-CCGAGCAgGUUc -3' miRNA: 3'- -AGGUGGC-AGUGCCaGGCUCGUgUAGu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 102941 | 0.7 | 0.807141 |
Target: 5'- gCCGaggCGUCGCGGUCCaGGCGC-UCGg -3' miRNA: 3'- aGGUg--GCAGUGCCAGGcUCGUGuAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 209548 | 0.72 | 0.753655 |
Target: 5'- gCCgggaACUGUCGCGGuUCCGcaAGCACGUCc -3' miRNA: 3'- aGG----UGGCAGUGCC-AGGC--UCGUGUAGu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 193323 | 0.66 | 0.952689 |
Target: 5'- aCgGCUGcaUCGCGGUCCGGGCcgaggACuUCAa -3' miRNA: 3'- aGgUGGC--AGUGCCAGGCUCG-----UGuAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 160527 | 0.67 | 0.940095 |
Target: 5'- aCCACCGUCACcagcacGUCgGAcGCGcCGUCGu -3' miRNA: 3'- aGGUGGCAGUGc-----CAGgCU-CGU-GUAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 166139 | 0.7 | 0.839955 |
Target: 5'- gCCGCCGUCgcugcugcuuGCGGUagagCGAGCGCAg-- -3' miRNA: 3'- aGGUGGCAG----------UGCCAg---GCUCGUGUagu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 14115 | 0.72 | 0.70627 |
Target: 5'- gCCugUGUCugGGUCCGccgaagggcuGGCACGUg- -3' miRNA: 3'- aGGugGCAGugCCAGGC----------UCGUGUAgu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 166003 | 0.67 | 0.935459 |
Target: 5'- -aCGCCGUCGCGcucggcgccGUCCGucCGCGUCu -3' miRNA: 3'- agGUGGCAGUGC---------CAGGCucGUGUAGu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 36938 | 0.73 | 0.647566 |
Target: 5'- aCUGCCGUCAUGGgcCCGAcGCugGUCGu -3' miRNA: 3'- aGGUGGCAGUGCCa-GGCU-CGugUAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 204530 | 0.69 | 0.869963 |
Target: 5'- cCCGuagUUGUCGCGGUCCGAgguGCGCAg-- -3' miRNA: 3'- aGGU---GGCAGUGCCAGGCU---CGUGUagu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 99019 | 0.68 | 0.920219 |
Target: 5'- gUUGCCGcUCGaGGUCCaGGCGCAUCAc -3' miRNA: 3'- aGGUGGC-AGUgCCAGGcUCGUGUAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 174049 | 0.7 | 0.831998 |
Target: 5'- aCCGuCCGUCugGG-CCG-GCgGCAUCAc -3' miRNA: 3'- aGGU-GGCAGugCCaGGCuCG-UGUAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 98925 | 0.7 | 0.815584 |
Target: 5'- gUCUGCuCGcgCACGG-CCGuGCGCAUCAc -3' miRNA: 3'- -AGGUG-GCa-GUGCCaGGCuCGUGUAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 168845 | 0.71 | 0.78982 |
Target: 5'- gCUGCgCGUCACGGacgCCGGGCuCAUCu -3' miRNA: 3'- aGGUG-GCAGUGCCa--GGCUCGuGUAGu -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 47949 | 0.72 | 0.753655 |
Target: 5'- aCCGCCGUCGCGcUCgGAaGCACAagUCGc -3' miRNA: 3'- aGGUGGCAGUGCcAGgCU-CGUGU--AGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 128502 | 0.66 | 0.960015 |
Target: 5'- cCCGCCGUCG-GGUCcCGuGaugGCAUCGu -3' miRNA: 3'- aGGUGGCAGUgCCAG-GCuCg--UGUAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 123961 | 0.66 | 0.956089 |
Target: 5'- gCCACugcgcgcgcagguCGUCGCGGUCgGcGGC-CGUCAg -3' miRNA: 3'- aGGUG-------------GCAGUGCCAGgC-UCGuGUAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 148876 | 0.66 | 0.952689 |
Target: 5'- cUCGCCGcCACGGgguccgccgCCGGGUccaccGCAUCGc -3' miRNA: 3'- aGGUGGCaGUGCCa--------GGCUCG-----UGUAGU- -5' |
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14282 | 5' | -56.1 | NC_003521.1 | + | 221779 | 0.67 | 0.940095 |
Target: 5'- gCCGCCGUCcucgaagcuccaGC-GUCCGcucgauaucuGGCACGUCAc -3' miRNA: 3'- aGGUGGCAG------------UGcCAGGC----------UCGUGUAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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