miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14282 5' -56.1 NC_003521.1 + 4363 0.69 0.876982
Target:  5'- gUUCGCCGcUUGCGG-CCGAGCAgGUUc -3'
miRNA:   3'- -AGGUGGC-AGUGCCaGGCUCGUgUAGu -5'
14282 5' -56.1 NC_003521.1 + 121372 0.68 0.902984
Target:  5'- uUCaCACUGUCGCGccuccaUCgCGAGUACAUCGu -3'
miRNA:   3'- -AG-GUGGCAGUGCc-----AG-GCUCGUGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 218245 0.68 0.902984
Target:  5'- --gGCCGUCACgGGUgCGA-CGCGUCAg -3'
miRNA:   3'- aggUGGCAGUG-CCAgGCUcGUGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 99019 0.68 0.920219
Target:  5'- gUUGCCGcUCGaGGUCCaGGCGCAUCAc -3'
miRNA:   3'- aGGUGGC-AGUgCCAGGcUCGUGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 94315 0.66 0.966518
Target:  5'- gCCGCCGUUucuGCGGgucggCCGAGgGauaAUCGa -3'
miRNA:   3'- aGGUGGCAG---UGCCa----GGCUCgUg--UAGU- -5'
14282 5' -56.1 NC_003521.1 + 103582 0.66 0.963367
Target:  5'- gCCGCCGUCGgcccCGG-CCGGuGCGCGg-- -3'
miRNA:   3'- aGGUGGCAGU----GCCaGGCU-CGUGUagu -5'
14282 5' -56.1 NC_003521.1 + 18539 0.66 0.963367
Target:  5'- -aCGCUGgCACGGggcUCUGGGCACcAUCAc -3'
miRNA:   3'- agGUGGCaGUGCC---AGGCUCGUG-UAGU- -5'
14282 5' -56.1 NC_003521.1 + 21095 0.66 0.960015
Target:  5'- cCCGCgaCGgCGCGGUCCcuccgcGCACGUCAc -3'
miRNA:   3'- aGGUG--GCaGUGCCAGGcu----CGUGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 128502 0.66 0.960015
Target:  5'- cCCGCCGUCG-GGUCcCGuGaugGCAUCGu -3'
miRNA:   3'- aGGUGGCAGUgCCAG-GCuCg--UGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 176769 0.66 0.960015
Target:  5'- -gCACCGUCA-GGUCguUGAGCACcUCc -3'
miRNA:   3'- agGUGGCAGUgCCAG--GCUCGUGuAGu -5'
14282 5' -56.1 NC_003521.1 + 89635 0.66 0.956457
Target:  5'- gUgACCGUCGCGG-CCGAGgaGCAg-- -3'
miRNA:   3'- aGgUGGCAGUGCCaGGCUCg-UGUagu -5'
14282 5' -56.1 NC_003521.1 + 123961 0.66 0.956089
Target:  5'- gCCACugcgcgcgcagguCGUCGCGGUCgGcGGC-CGUCAg -3'
miRNA:   3'- aGGUG-------------GCAGUGCCAGgC-UCGuGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 193323 0.66 0.952689
Target:  5'- aCgGCUGcaUCGCGGUCCGGGCcgaggACuUCAa -3'
miRNA:   3'- aGgUGGC--AGUGCCAGGCUCG-----UGuAGU- -5'
14282 5' -56.1 NC_003521.1 + 56724 0.66 0.952689
Target:  5'- aUUACuCGUUcaucaGCGGUCCGAGCGCcaugGUCc -3'
miRNA:   3'- aGGUG-GCAG-----UGCCAGGCUCGUG----UAGu -5'
14282 5' -56.1 NC_003521.1 + 148876 0.66 0.952689
Target:  5'- cUCGCCGcCACGGgguccgccgCCGGGUccaccGCAUCGc -3'
miRNA:   3'- aGGUGGCaGUGCCa--------GGCUCG-----UGUAGU- -5'
14282 5' -56.1 NC_003521.1 + 128788 0.68 0.908949
Target:  5'- gUCGCaGUaCGCGGUCgGGGCACcgCAg -3'
miRNA:   3'- aGGUGgCA-GUGCCAGgCUCGUGuaGU- -5'
14282 5' -56.1 NC_003521.1 + 146361 0.67 0.925521
Target:  5'- -gCGCCGUaCACGGggcgguUCCGGGUACAg-- -3'
miRNA:   3'- agGUGGCA-GUGCC------AGGCUCGUGUagu -5'
14282 5' -56.1 NC_003521.1 + 119017 0.67 0.935459
Target:  5'- aCUACCccacCACGG-CCGAGCGCAa-- -3'
miRNA:   3'- aGGUGGca--GUGCCaGGCUCGUGUagu -5'
14282 5' -56.1 NC_003521.1 + 166003 0.67 0.935459
Target:  5'- -aCGCCGUCGCGcucggcgccGUCCGucCGCGUCu -3'
miRNA:   3'- agGUGGCAGUGC---------CAGGCucGUGUAGu -5'
14282 5' -56.1 NC_003521.1 + 221779 0.67 0.940095
Target:  5'- gCCGCCGUCcucgaagcuccaGC-GUCCGcucgauaucuGGCACGUCAc -3'
miRNA:   3'- aGGUGGCAG------------UGcCAGGC----------UCGUGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.