miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14284 5' -65 NC_003521.1 + 53357 0.67 0.580015
Target:  5'- --gCGCGGCGGCGGaGGGGccgacagACCGa -3'
miRNA:   3'- cagGCGCCGCCGCC-CCCUcca----UGGCc -5'
14284 5' -65 NC_003521.1 + 26049 0.67 0.580015
Target:  5'- -aCgGCGGCGaGCGGGaGGGGGgagaGGa -3'
miRNA:   3'- caGgCGCCGC-CGCCC-CCUCCauggCC- -5'
14284 5' -65 NC_003521.1 + 123355 0.67 0.5791
Target:  5'- -gUCGCcggguguggaggaGGCGGCGGGGGcuGGUGagaauaCGGg -3'
miRNA:   3'- caGGCG-------------CCGCCGCCCCCu-CCAUg-----GCC- -5'
14284 5' -65 NC_003521.1 + 103463 0.68 0.570879
Target:  5'- cGUCCGCGGauGCGGGaGGGcGGcuccAgCGGg -3'
miRNA:   3'- -CAGGCGCCgcCGCCC-CCU-CCa---UgGCC- -5'
14284 5' -65 NC_003521.1 + 214978 0.68 0.570879
Target:  5'- uUUgGCGGCGGCcaGGGGGGUGCg-- -3'
miRNA:   3'- cAGgCGCCGCCGccCCCUCCAUGgcc -5'
14284 5' -65 NC_003521.1 + 169976 0.68 0.570879
Target:  5'- cUCCugggagGCGGCGGCGGGGGAcgcuuuccaugaGGccuUGCUGc -3'
miRNA:   3'- cAGG------CGCCGCCGCCCCCU------------CC---AUGGCc -5'
14284 5' -65 NC_003521.1 + 129310 0.68 0.561778
Target:  5'- ---aGCGGCGGCGGGaaGAGGUcGCCc- -3'
miRNA:   3'- caggCGCCGCCGCCCc-CUCCA-UGGcc -5'
14284 5' -65 NC_003521.1 + 60686 0.68 0.561778
Target:  5'- -gCUGCGGcCGcGCGGGGGAcccgGGggcgGCgCGGg -3'
miRNA:   3'- caGGCGCC-GC-CGCCCCCU----CCa---UG-GCC- -5'
14284 5' -65 NC_003521.1 + 101723 0.68 0.561778
Target:  5'- --aUGC-GCGGCGGGGGcgagauGGGgaagGCCGGc -3'
miRNA:   3'- cagGCGcCGCCGCCCCC------UCCa---UGGCC- -5'
14284 5' -65 NC_003521.1 + 157279 0.68 0.561778
Target:  5'- uUCCGgggcaaCGGCGGCcgcguacgGGGGGAGGcgggAUUGGa -3'
miRNA:   3'- cAGGC------GCCGCCG--------CCCCCUCCa---UGGCC- -5'
14284 5' -65 NC_003521.1 + 228972 0.68 0.552717
Target:  5'- cGUCCGaggaGGUGcGCGGGcGGcgcAGG-ACCGGc -3'
miRNA:   3'- -CAGGCg---CCGC-CGCCC-CC---UCCaUGGCC- -5'
14284 5' -65 NC_003521.1 + 181272 0.68 0.5437
Target:  5'- -cCCGCGGCGccggacGCGGGaaaGGGGUGCUGc -3'
miRNA:   3'- caGGCGCCGC------CGCCCc--CUCCAUGGCc -5'
14284 5' -65 NC_003521.1 + 160508 0.68 0.542801
Target:  5'- -aCCGCGGCGGgaGGaGGGGGcggcagccuccucGUACgCGGa -3'
miRNA:   3'- caGGCGCCGCCg-CC-CCCUC-------------CAUG-GCC- -5'
14284 5' -65 NC_003521.1 + 14758 0.68 0.538313
Target:  5'- -gCCGCGGC--CGGGGcgcgccuucguggccGAGGUGCUGGu -3'
miRNA:   3'- caGGCGCCGccGCCCC---------------CUCCAUGGCC- -5'
14284 5' -65 NC_003521.1 + 105363 0.68 0.534732
Target:  5'- cGUCCGCGuCGaCGGGGGGcGG-ACCGa -3'
miRNA:   3'- -CAGGCGCcGCcGCCCCCU-CCaUGGCc -5'
14284 5' -65 NC_003521.1 + 87761 0.68 0.525816
Target:  5'- -gCCcCGGCGGCGGaGGAGGc-CUGGg -3'
miRNA:   3'- caGGcGCCGCCGCCcCCUCCauGGCC- -5'
14284 5' -65 NC_003521.1 + 192307 0.68 0.525816
Target:  5'- cGUCCGCGGUagcGGCGucGGcGGcaccguGGGUACCGu -3'
miRNA:   3'- -CAGGCGCCG---CCGC--CC-CC------UCCAUGGCc -5'
14284 5' -65 NC_003521.1 + 186791 0.68 0.525816
Target:  5'- -gUgGCGGCGGCGGGGGcaAGaaGCaCGGc -3'
miRNA:   3'- caGgCGCCGCCGCCCCC--UCcaUG-GCC- -5'
14284 5' -65 NC_003521.1 + 5817 0.68 0.516958
Target:  5'- cGUCCGCGGaGGCcaGGGGGAccGcUACCGc -3'
miRNA:   3'- -CAGGCGCCgCCG--CCCCCU--CcAUGGCc -5'
14284 5' -65 NC_003521.1 + 239085 0.68 0.516958
Target:  5'- aGUCaUGCGGuCGcgggaggaacGCGaGGGGAGGggACCGGa -3'
miRNA:   3'- -CAG-GCGCC-GC----------CGC-CCCCUCCa-UGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.