miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14290 3' -59.9 NC_003521.1 + 36832 0.66 0.839417
Target:  5'- cACGGGCCGG--CGCUGCU-GU-GCCg -3'
miRNA:   3'- cUGCCUGGCCaaGCGGCGAaCGcCGG- -5'
14290 3' -59.9 NC_003521.1 + 39461 0.68 0.767994
Target:  5'- gGACGGcAgCGGUucgugucccgUCGCCGCcucguggacgaugGUGGCCa -3'
miRNA:   3'- -CUGCC-UgGCCA----------AGCGGCGaa-----------CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 40520 0.68 0.764444
Target:  5'- cGACcGGCCGGccCGCCGCacGCcGCCg -3'
miRNA:   3'- -CUGcCUGGCCaaGCGGCGaaCGcCGG- -5'
14290 3' -59.9 NC_003521.1 + 43482 0.71 0.575787
Target:  5'- cGGCGG-CCGuGcUgGCCGCg-GCGGCCa -3'
miRNA:   3'- -CUGCCuGGC-CaAgCGGCGaaCGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 43535 0.72 0.556862
Target:  5'- aGACGGccgaGCCGaGagaCGCCGCgacagagGCGGCCg -3'
miRNA:   3'- -CUGCC----UGGC-Caa-GCGGCGaa-----CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 44709 0.66 0.873539
Target:  5'- aACGGGCCGGcggaucuauaccgcgCGCCGCauuucgUGCuGCUg -3'
miRNA:   3'- cUGCCUGGCCaa-------------GCGGCGa-----ACGcCGG- -5'
14290 3' -59.9 NC_003521.1 + 44761 0.67 0.815684
Target:  5'- aGACGGACCGcGgaaggCgGCCGg-UGCuGGCCc -3'
miRNA:   3'- -CUGCCUGGC-Caa---G-CGGCgaACG-CCGG- -5'
14290 3' -59.9 NC_003521.1 + 45284 0.75 0.382894
Target:  5'- cAUGGACCGGg-CGCCGCUg--GGCCa -3'
miRNA:   3'- cUGCCUGGCCaaGCGGCGAacgCCGG- -5'
14290 3' -59.9 NC_003521.1 + 45417 0.66 0.868712
Target:  5'- --aGGuaGCCGGUgccCGCCGUcggcGCGGUCa -3'
miRNA:   3'- cugCC--UGGCCAa--GCGGCGaa--CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 49117 0.68 0.764444
Target:  5'- cGugGuGACCGcggCGCCGCUgcUGCGGg- -3'
miRNA:   3'- -CugC-CUGGCcaaGCGGCGA--ACGCCgg -5'
14290 3' -59.9 NC_003521.1 + 49670 0.66 0.847753
Target:  5'- aGAgGGGCCGGgcgagcgcggcgcugUCGCCGUcaGCcuGCCa -3'
miRNA:   3'- -CUgCCUGGCCa--------------AGCGGCGaaCGc-CGG- -5'
14290 3' -59.9 NC_003521.1 + 50373 0.67 0.80747
Target:  5'- uACGuGaACUGGga-GCCGCUuaacUGCGGCUa -3'
miRNA:   3'- cUGC-C-UGGCCaagCGGCGA----ACGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 53206 0.7 0.652431
Target:  5'- cGCGGcCCGGcUCGCC-CUgGCaGGCCg -3'
miRNA:   3'- cUGCCuGGCCaAGCGGcGAaCG-CCGG- -5'
14290 3' -59.9 NC_003521.1 + 53501 0.71 0.575787
Target:  5'- cGCGaGCCGGUgCGCUGUUguccgacGCGGCCg -3'
miRNA:   3'- cUGCcUGGCCAaGCGGCGAa------CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 54502 0.67 0.829306
Target:  5'- cGGCGGcCCGGcguggaccaggaucUgcacggCGCCGCUggggcccgGCGGCUu -3'
miRNA:   3'- -CUGCCuGGCC--------------Aa-----GCGGCGAa-------CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 56652 0.67 0.818928
Target:  5'- cACGGGCCGGUgcaccUC-CCGCUcGCGcaccaggucgcaguaGCCg -3'
miRNA:   3'- cUGCCUGGCCA-----AGcGGCGAaCGC---------------CGG- -5'
14290 3' -59.9 NC_003521.1 + 58030 0.66 0.847004
Target:  5'- cGACgaGGGCgCGcGcgugUUGCUGCUgGCGGCCa -3'
miRNA:   3'- -CUG--CCUG-GC-Ca---AGCGGCGAaCGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 61831 0.67 0.799117
Target:  5'- cGAgGGGCCcuGGgagggCGCCGCggaaccGCGGCg -3'
miRNA:   3'- -CUgCCUGG--CCaa---GCGGCGaa----CGCCGg -5'
14290 3' -59.9 NC_003521.1 + 65710 0.66 0.868712
Target:  5'- --aGGACagCGG--CGCCGCg-GCGGCCc -3'
miRNA:   3'- cugCCUG--GCCaaGCGGCGaaCGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 65767 0.66 0.8455
Target:  5'- uGACGGGCCGcaucacacCGCCGCcggacaacuuCGGCCg -3'
miRNA:   3'- -CUGCCUGGCcaa-----GCGGCGaac-------GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.