miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14290 3' -59.9 NC_003521.1 + 56 0.74 0.448377
Target:  5'- cACGGaACCGGUUucCGCgGCggcgUGCGGCg -3'
miRNA:   3'- cUGCC-UGGCCAA--GCGgCGa---ACGCCGg -5'
14290 3' -59.9 NC_003521.1 + 165 0.72 0.53812
Target:  5'- cACGGcuCCGGc-CGCCGCUU-CGGCCu -3'
miRNA:   3'- cUGCCu-GGCCaaGCGGCGAAcGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 198 0.68 0.764444
Target:  5'- cGACcGGCCGGccCGCCGCacGCcGCCg -3'
miRNA:   3'- -CUGcCUGGCCaaGCGGCGaaCGcCGG- -5'
14290 3' -59.9 NC_003521.1 + 3650 0.66 0.861657
Target:  5'- cACGG-CCGc--CGCCGuCUgccucgGCGGCCg -3'
miRNA:   3'- cUGCCuGGCcaaGCGGC-GAa-----CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 4353 1.11 0.001667
Target:  5'- gGACGGACCGGUUCGCCGCUUGCGGCCg -3'
miRNA:   3'- -CUGCCUGGCCAAGCGGCGAACGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 7933 0.7 0.665846
Target:  5'- cACaGACCGcGUagcucauccuccagaUCGCCGCggugucGCGGCCg -3'
miRNA:   3'- cUGcCUGGC-CA---------------AGCGGCGaa----CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 14748 0.72 0.519599
Target:  5'- uGACGGGCCGGc-CGCgGCcgggGCGcGCCu -3'
miRNA:   3'- -CUGCCUGGCCaaGCGgCGaa--CGC-CGG- -5'
14290 3' -59.9 NC_003521.1 + 14801 0.68 0.782017
Target:  5'- -cUGGACUGGUUCGgCGCcgUGUacGCCa -3'
miRNA:   3'- cuGCCUGGCCAAGCgGCGa-ACGc-CGG- -5'
14290 3' -59.9 NC_003521.1 + 17354 0.7 0.662017
Target:  5'- -cCGGGCCGugaCGCCgGCgcgGCGGCCc -3'
miRNA:   3'- cuGCCUGGCcaaGCGG-CGaa-CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 17481 0.72 0.510433
Target:  5'- cGACGGcACCGGUagcggCGCCGCcggucacgGCGGUUc -3'
miRNA:   3'- -CUGCC-UGGCCAa----GCGGCGaa------CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 18706 0.67 0.80747
Target:  5'- cGGCGcGAuCCGGcuguggcUGCCGCUgGCGGCg -3'
miRNA:   3'- -CUGC-CU-GGCCaa-----GCGGCGAaCGCCGg -5'
14290 3' -59.9 NC_003521.1 + 19461 0.7 0.642832
Target:  5'- cGGCgGGACCaugUCGCUGC--GCGGCCa -3'
miRNA:   3'- -CUG-CCUGGccaAGCGGCGaaCGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 19983 0.71 0.614015
Target:  5'- --gGGACUGuGUUCGUgGCUgGCGGCg -3'
miRNA:   3'- cugCCUGGC-CAAGCGgCGAaCGCCGg -5'
14290 3' -59.9 NC_003521.1 + 22184 0.69 0.706666
Target:  5'- aGGCGccGCCGGccgUgGCCGCUUaccgccgcgcgcugGCGGCCg -3'
miRNA:   3'- -CUGCc-UGGCCa--AgCGGCGAA--------------CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 27243 0.66 0.839417
Target:  5'- gGGCGaGAgcaCGGgcUCGCCGaugaUGCGGCCc -3'
miRNA:   3'- -CUGC-CUg--GCCa-AGCGGCga--ACGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 29238 0.69 0.700075
Target:  5'- gGACGucuCCGGggacacCGCCGCgagcgUGCGGCg -3'
miRNA:   3'- -CUGCcu-GGCCaa----GCGGCGa----ACGCCGg -5'
14290 3' -59.9 NC_003521.1 + 32867 0.66 0.854419
Target:  5'- aGGCcGAUCGGUUuggcgcccgCGCCGCcggUGCuGCCg -3'
miRNA:   3'- -CUGcCUGGCCAA---------GCGGCGa--ACGcCGG- -5'
14290 3' -59.9 NC_003521.1 + 34456 0.71 0.585305
Target:  5'- uGCGGGCCuGGgggUCGUCGCc-GCaGGCCa -3'
miRNA:   3'- cUGCCUGG-CCa--AGCGGCGaaCG-CCGG- -5'
14290 3' -59.9 NC_003521.1 + 35027 0.71 0.613055
Target:  5'- cGGCGGACgCGGUUgGgCaCGCUcaugccgUGCGGCg -3'
miRNA:   3'- -CUGCCUG-GCCAAgC-G-GCGA-------ACGCCGg -5'
14290 3' -59.9 NC_003521.1 + 35928 0.68 0.737326
Target:  5'- cGCGGccACCGuccCGCCGC--GCGGCCa -3'
miRNA:   3'- cUGCC--UGGCcaaGCGGCGaaCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.