miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14290 3' -59.9 NC_003521.1 + 163190 0.66 0.847004
Target:  5'- aGCGGACaCGGUggUgGCgGCggcaGCGGCa -3'
miRNA:   3'- cUGCCUG-GCCA--AgCGgCGaa--CGCCGg -5'
14290 3' -59.9 NC_003521.1 + 164457 0.66 0.861657
Target:  5'- cGCGG-CCGucacggUCGCCGCU-GCcGCCg -3'
miRNA:   3'- cUGCCuGGCca----AGCGGCGAaCGcCGG- -5'
14290 3' -59.9 NC_003521.1 + 184359 0.66 0.87558
Target:  5'- gGGCGGGCCGuGgcgcggCGCCucucggaccuggGCcacgagGCGGCCu -3'
miRNA:   3'- -CUGCCUGGC-Caa----GCGG------------CGaa----CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 233161 0.66 0.854419
Target:  5'- --gGGcACCGcuGUccgCGCCGCcgugGCGGCCg -3'
miRNA:   3'- cugCC-UGGC--CAa--GCGGCGaa--CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 36832 0.66 0.839417
Target:  5'- cACGGGCCGG--CGCUGCU-GU-GCCg -3'
miRNA:   3'- cUGCCUGGCCaaGCGGCGAaCGcCGG- -5'
14290 3' -59.9 NC_003521.1 + 58030 0.66 0.847004
Target:  5'- cGACgaGGGCgCGcGcgugUUGCUGCUgGCGGCCa -3'
miRNA:   3'- -CUG--CCUG-GC-Ca---AGCGGCGAaCGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 3650 0.66 0.861657
Target:  5'- cACGG-CCGc--CGCCGuCUgccucgGCGGCCg -3'
miRNA:   3'- cUGCCuGGCcaaGCGGC-GAa-----CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 32867 0.66 0.854419
Target:  5'- aGGCcGAUCGGUUuggcgcccgCGCCGCcggUGCuGCCg -3'
miRNA:   3'- -CUGcCUGGCCAA---------GCGGCGa--ACGcCGG- -5'
14290 3' -59.9 NC_003521.1 + 127035 0.66 0.854419
Target:  5'- cGCGGugcccgucgcGCUGGccgUCGCCGUcgucgacGCGGCCu -3'
miRNA:   3'- cUGCC----------UGGCCa--AGCGGCGaa-----CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 140212 0.66 0.837879
Target:  5'- uGGCGG-CCGagUCGCCGUgcagcaugaugGCGGCUc -3'
miRNA:   3'- -CUGCCuGGCcaAGCGGCGaa---------CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 70524 0.66 0.861657
Target:  5'- cGACGuGACCGccUCG-CGCUcgGCcGGCCg -3'
miRNA:   3'- -CUGC-CUGGCcaAGCgGCGAa-CG-CCGG- -5'
14290 3' -59.9 NC_003521.1 + 27243 0.66 0.839417
Target:  5'- gGGCGaGAgcaCGGgcUCGCCGaugaUGCGGCCc -3'
miRNA:   3'- -CUGC-CUg--GCCa-AGCGGCga--ACGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 65710 0.66 0.868712
Target:  5'- --aGGACagCGG--CGCCGCg-GCGGCCc -3'
miRNA:   3'- cugCCUG--GCCaaGCGGCGaaCGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 119986 0.66 0.846253
Target:  5'- cGACGaGCCGGgcgacaugCGCCGCUggcUGUaguugaucaggucGGCCu -3'
miRNA:   3'- -CUGCcUGGCCaa------GCGGCGA---ACG-------------CCGG- -5'
14290 3' -59.9 NC_003521.1 + 143917 0.66 0.838649
Target:  5'- aGACGGGCaCGGcgCGCCGCauccccaacUGCucgcaccGGCUg -3'
miRNA:   3'- -CUGCCUG-GCCaaGCGGCGa--------ACG-------CCGG- -5'
14290 3' -59.9 NC_003521.1 + 217345 0.66 0.861657
Target:  5'- gGACGGcgGCCGGUccucguacUUGCUGUguaacaCGGCCa -3'
miRNA:   3'- -CUGCC--UGGCCA--------AGCGGCGaac---GCCGG- -5'
14290 3' -59.9 NC_003521.1 + 110665 0.66 0.847004
Target:  5'- cACGGcCCGGUcgGCCaGCgcgucgGUGGCCu -3'
miRNA:   3'- cUGCCuGGCCAagCGG-CGaa----CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 218400 0.66 0.861657
Target:  5'- gGGCGGuACuCGGccaCGCCGCgcaGCauGGCCa -3'
miRNA:   3'- -CUGCC-UG-GCCaa-GCGGCGaa-CG--CCGG- -5'
14290 3' -59.9 NC_003521.1 + 214830 0.66 0.868712
Target:  5'- cGACGG--CGGUUCcauGCUGUUUGCuGCCc -3'
miRNA:   3'- -CUGCCugGCCAAG---CGGCGAACGcCGG- -5'
14290 3' -59.9 NC_003521.1 + 65767 0.66 0.8455
Target:  5'- uGACGGGCCGcaucacacCGCCGCcggacaacuuCGGCCg -3'
miRNA:   3'- -CUGCCUGGCcaa-----GCGGCGaac-------GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.