miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14290 3' -59.9 NC_003521.1 + 101063 0.7 0.662017
Target:  5'- cGACGG-CCGGaUCcuGCCGUcggcacGCGGCCu -3'
miRNA:   3'- -CUGCCuGGCCaAG--CGGCGaa----CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 35027 0.71 0.613055
Target:  5'- cGGCGGACgCGGUUgGgCaCGCUcaugccgUGCGGCg -3'
miRNA:   3'- -CUGCCUG-GCCAAgC-G-GCGA-------ACGCCGg -5'
14290 3' -59.9 NC_003521.1 + 211055 0.71 0.614015
Target:  5'- uGGCuGACCucGUUCGUCGCUcGCGGCg -3'
miRNA:   3'- -CUGcCUGGc-CAAGCGGCGAaCGCCGg -5'
14290 3' -59.9 NC_003521.1 + 19983 0.71 0.614015
Target:  5'- --gGGACUGuGUUCGUgGCUgGCGGCg -3'
miRNA:   3'- cugCCUGGC-CAAGCGgCGAaCGCCGg -5'
14290 3' -59.9 NC_003521.1 + 148421 0.7 0.623617
Target:  5'- cAUGGugCGGgcgGCCGCgccgGCGGCUc -3'
miRNA:   3'- cUGCCugGCCaagCGGCGaa--CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 166099 0.7 0.623617
Target:  5'- aGCGGGCCGGcaggUUCacgcggGCCuGCUUcaggGCGGCCg -3'
miRNA:   3'- cUGCCUGGCC----AAG------CGG-CGAA----CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 192152 0.7 0.641872
Target:  5'- cGCGGAUccacguaggucugCGGUgucagCGCCGgUcGCGGCCa -3'
miRNA:   3'- cUGCCUG-------------GCCAa----GCGGCgAaCGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 112426 0.7 0.642832
Target:  5'- -uCGGACCGa--CGcCCGCUcagGCGGCCc -3'
miRNA:   3'- cuGCCUGGCcaaGC-GGCGAa--CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 53206 0.7 0.652431
Target:  5'- cGCGGcCCGGcUCGCC-CUgGCaGGCCg -3'
miRNA:   3'- cUGCCuGGCCaAGCGGcGAaCG-CCGG- -5'
14290 3' -59.9 NC_003521.1 + 157969 0.71 0.604425
Target:  5'- cGACGGcGCUGGUagcgacgcCGCCGCccGCGGCg -3'
miRNA:   3'- -CUGCC-UGGCCAa-------GCGGCGaaCGCCGg -5'
14290 3' -59.9 NC_003521.1 + 34456 0.71 0.585305
Target:  5'- uGCGGGCCuGGgggUCGUCGCc-GCaGGCCa -3'
miRNA:   3'- cUGCCUGG-CCa--AGCGGCGaaCG-CCGG- -5'
14290 3' -59.9 NC_003521.1 + 43482 0.71 0.575787
Target:  5'- cGGCGG-CCGuGcUgGCCGCg-GCGGCCa -3'
miRNA:   3'- -CUGCCuGGC-CaAgCGGCGaaCGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 142280 0.76 0.317227
Target:  5'- -uCGGGCUGGgacccgcCGCCGCUgcaGCGGCCc -3'
miRNA:   3'- cuGCCUGGCCaa-----GCGGCGAa--CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 45284 0.75 0.382894
Target:  5'- cAUGGACCGGg-CGCCGCUg--GGCCa -3'
miRNA:   3'- cUGCCUGGCCaaGCGGCGAacgCCGG- -5'
14290 3' -59.9 NC_003521.1 + 101381 0.75 0.382894
Target:  5'- cGCGaGCCGucgCGCCGCUUGaCGGCCa -3'
miRNA:   3'- cUGCcUGGCcaaGCGGCGAAC-GCCGG- -5'
14290 3' -59.9 NC_003521.1 + 74579 0.75 0.390727
Target:  5'- cGACGGAgCGGcggCGCgGCgucccGCGGCCg -3'
miRNA:   3'- -CUGCCUgGCCaa-GCGgCGaa---CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 200284 0.74 0.448377
Target:  5'- cACGGaACCGGUUucCGCgGCggcgUGCGGCg -3'
miRNA:   3'- cUGCC-UGGCCAA--GCGgCGa---ACGCCGg -5'
14290 3' -59.9 NC_003521.1 + 17481 0.72 0.510433
Target:  5'- cGACGGcACCGGUagcggCGCCGCcggucacgGCGGUUc -3'
miRNA:   3'- -CUGCC-UGGCCAa----GCGGCGaa------CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 200393 0.72 0.53812
Target:  5'- cACGGcuCCGGc-CGCCGCUU-CGGCCu -3'
miRNA:   3'- cUGCCu-GGCCaaGCGGCGAAcGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 192214 0.71 0.565358
Target:  5'- cGGCGGACCcuGUUucuugcgacccggCGCCGCgggaggGUGGCCg -3'
miRNA:   3'- -CUGCCUGGc-CAA-------------GCGGCGaa----CGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.