miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14290 3' -59.9 NC_003521.1 + 4353 1.11 0.001667
Target:  5'- gGACGGACCGGUUCGCCGCUUGCGGCCg -3'
miRNA:   3'- -CUGCCUGGCCAAGCGGCGAACGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 151646 0.78 0.25693
Target:  5'- -cCGGcCCGGUUCGCCGCUcgucuccccggggcuUGCGGUUu -3'
miRNA:   3'- cuGCCuGGCCAAGCGGCGA---------------ACGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 123587 0.78 0.260407
Target:  5'- cGGCGGcGCCGGga-GCCGCc-GCGGCCg -3'
miRNA:   3'- -CUGCC-UGGCCaagCGGCGaaCGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 146896 0.77 0.27837
Target:  5'- cGGCGGGCagCGGUagUCGCCGCUUGCcGCg -3'
miRNA:   3'- -CUGCCUG--GCCA--AGCGGCGAACGcCGg -5'
14290 3' -59.9 NC_003521.1 + 142280 0.76 0.317227
Target:  5'- -uCGGGCUGGgacccgcCGCCGCUgcaGCGGCCc -3'
miRNA:   3'- cuGCCUGGCCaa-----GCGGCGAa--CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 45284 0.75 0.382894
Target:  5'- cAUGGACCGGg-CGCCGCUg--GGCCa -3'
miRNA:   3'- cUGCCUGGCCaaGCGGCGAacgCCGG- -5'
14290 3' -59.9 NC_003521.1 + 101381 0.75 0.382894
Target:  5'- cGCGaGCCGucgCGCCGCUUGaCGGCCa -3'
miRNA:   3'- cUGCcUGGCcaaGCGGCGAAC-GCCGG- -5'
14290 3' -59.9 NC_003521.1 + 166629 0.75 0.389939
Target:  5'- aGACGGcgucgggccgcgcGCCGGg-CGCCGCggcgcaGCGGCCa -3'
miRNA:   3'- -CUGCC-------------UGGCCaaGCGGCGaa----CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 74579 0.75 0.390727
Target:  5'- cGACGGAgCGGcggCGCgGCgucccGCGGCCg -3'
miRNA:   3'- -CUGCCUgGCCaa-GCGgCGaa---CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 88775 0.75 0.398664
Target:  5'- uGACGGACCugcgGGUgaagCaCCGC-UGCGGCCu -3'
miRNA:   3'- -CUGCCUGG----CCAa---GcGGCGaACGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 223732 0.74 0.412391
Target:  5'- cGGCGGGuCCGGUggcgggaacgugggUCGCCGCcaGCGGUa -3'
miRNA:   3'- -CUGCCU-GGCCA--------------AGCGGCGaaCGCCGg -5'
14290 3' -59.9 NC_003521.1 + 223320 0.74 0.423083
Target:  5'- -cCGGGCCGGgaacCGCCGUgaccgGCGGCg -3'
miRNA:   3'- cuGCCUGGCCaa--GCGGCGaa---CGCCGg -5'
14290 3' -59.9 NC_003521.1 + 56 0.74 0.448377
Target:  5'- cACGGaACCGGUUucCGCgGCggcgUGCGGCg -3'
miRNA:   3'- cUGCC-UGGCCAA--GCGgCGa---ACGCCGg -5'
14290 3' -59.9 NC_003521.1 + 240605 0.74 0.448377
Target:  5'- cACGGaACCGGUUucCGCgGCggcgUGCGGCg -3'
miRNA:   3'- cUGCC-UGGCCAA--GCGgCGa---ACGCCGg -5'
14290 3' -59.9 NC_003521.1 + 200284 0.74 0.448377
Target:  5'- cACGGaACCGGUUucCGCgGCggcgUGCGGCg -3'
miRNA:   3'- cUGCC-UGGCCAA--GCGgCGa---ACGCCGg -5'
14290 3' -59.9 NC_003521.1 + 17481 0.72 0.510433
Target:  5'- cGACGGcACCGGUagcggCGCCGCcggucacgGCGGUUc -3'
miRNA:   3'- -CUGCC-UGGCCAa----GCGGCGaa------CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 14748 0.72 0.519599
Target:  5'- uGACGGGCCGGc-CGCgGCcgggGCGcGCCu -3'
miRNA:   3'- -CUGCCUGGCCaaGCGgCGaa--CGC-CGG- -5'
14290 3' -59.9 NC_003521.1 + 240714 0.72 0.53812
Target:  5'- cACGGcuCCGGc-CGCCGCUU-CGGCCu -3'
miRNA:   3'- cUGCCu-GGCCaaGCGGCGAAcGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 200393 0.72 0.53812
Target:  5'- cACGGcuCCGGc-CGCCGCUU-CGGCCu -3'
miRNA:   3'- cUGCCu-GGCCaaGCGGCGAAcGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 165 0.72 0.53812
Target:  5'- cACGGcuCCGGc-CGCCGCUU-CGGCCu -3'
miRNA:   3'- cUGCCu-GGCCaaGCGGCGAAcGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.