miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14290 5' -58.8 NC_003521.1 + 45976 0.65 0.879584
Target:  5'- cAGAagAGCUCCagccaaaAGGUG-AGGCCCaguaGGUAg -3'
miRNA:   3'- -UCU--UCGAGG-------UCCACgUCUGGGg---CCAU- -5'
14290 5' -58.8 NC_003521.1 + 218542 0.66 0.866193
Target:  5'- aGGAgAGCUgCCAGGcgaggcgugGUAGACCCCGa-- -3'
miRNA:   3'- -UCU-UCGA-GGUCCa--------CGUCUGGGGCcau -5'
14290 5' -58.8 NC_003521.1 + 90564 0.66 0.866193
Target:  5'- gAGAGGCcggCCGcGGUGCAGGCCgacgugacgugcUCGGa- -3'
miRNA:   3'- -UCUUCGa--GGU-CCACGUCUGG------------GGCCau -5'
14290 5' -58.8 NC_003521.1 + 19110 0.66 0.851331
Target:  5'- aGGGAGaCgacgCGGGUgGCGGGCCgCCGGUGu -3'
miRNA:   3'- -UCUUC-Gag--GUCCA-CGUCUGG-GGCCAU- -5'
14290 5' -58.8 NC_003521.1 + 23222 0.66 0.843618
Target:  5'- gAGAcGCcccugcuggUCCGGG-GCGGACCCgGGg- -3'
miRNA:   3'- -UCUuCG---------AGGUCCaCGUCUGGGgCCau -5'
14290 5' -58.8 NC_003521.1 + 155806 0.66 0.842837
Target:  5'- uGGggGUcaacUCCaAGGUGCGGGCCUgcgucauCGGUu -3'
miRNA:   3'- -UCuuCG----AGG-UCCACGUCUGGG-------GCCAu -5'
14290 5' -58.8 NC_003521.1 + 103544 0.67 0.835726
Target:  5'- cGcAGCUCCAGGUcGCugGGGCCCCc--- -3'
miRNA:   3'- uCuUCGAGGUCCA-CG--UCUGGGGccau -5'
14290 5' -58.8 NC_003521.1 + 92090 0.67 0.835726
Target:  5'- gGGggGUgCgCAGG-GCGGuGCCCCGGg- -3'
miRNA:   3'- -UCuuCGaG-GUCCaCGUC-UGGGGCCau -5'
14290 5' -58.8 NC_003521.1 + 19480 0.67 0.835726
Target:  5'- ---cGCggCCAGGUGCAGgugGCCCgcuCGGUGu -3'
miRNA:   3'- ucuuCGa-GGUCCACGUC---UGGG---GCCAU- -5'
14290 5' -58.8 NC_003521.1 + 102708 0.67 0.835726
Target:  5'- uGGAGCUCgGGcGUgacguagagcacGCAGACCUCGGc- -3'
miRNA:   3'- uCUUCGAGgUC-CA------------CGUCUGGGGCCau -5'
14290 5' -58.8 NC_003521.1 + 196078 0.67 0.827661
Target:  5'- uGGAcuGGCgCgAGaGcUGCAGACCCCGGa- -3'
miRNA:   3'- -UCU--UCGaGgUC-C-ACGUCUGGGGCCau -5'
14290 5' -58.8 NC_003521.1 + 174158 0.67 0.827661
Target:  5'- uGAcGCUCCAGGgccUGCAGGCCgCGc-- -3'
miRNA:   3'- uCUuCGAGGUCC---ACGUCUGGgGCcau -5'
14290 5' -58.8 NC_003521.1 + 64335 0.67 0.827661
Target:  5'- -cGAGCagaugagCCAGcUGCAGGCCCUGGg- -3'
miRNA:   3'- ucUUCGa------GGUCcACGUCUGGGGCCau -5'
14290 5' -58.8 NC_003521.1 + 141294 0.67 0.827661
Target:  5'- cGAcAGgUgCAGGUGCGGgcggcGCCCCGGa- -3'
miRNA:   3'- uCU-UCgAgGUCCACGUC-----UGGGGCCau -5'
14290 5' -58.8 NC_003521.1 + 195627 0.67 0.827661
Target:  5'- uAGAuGCgUCgCAGGuUGUAGAUCUCGGUGg -3'
miRNA:   3'- -UCUuCG-AG-GUCC-ACGUCUGGGGCCAU- -5'
14290 5' -58.8 NC_003521.1 + 183138 0.67 0.819429
Target:  5'- cGGucGCaUCCccGUGCAGACCCagaCGGUGu -3'
miRNA:   3'- -UCuuCG-AGGucCACGUCUGGG---GCCAU- -5'
14290 5' -58.8 NC_003521.1 + 195598 0.67 0.811039
Target:  5'- --cAGCUCCAGGUGCGcagccGGCCCgccagcUGGUc -3'
miRNA:   3'- ucuUCGAGGUCCACGU-----CUGGG------GCCAu -5'
14290 5' -58.8 NC_003521.1 + 226987 0.67 0.793811
Target:  5'- cGGucGUcacauUCCAGGUGCuuuccgacGGCCCCGGa- -3'
miRNA:   3'- -UCuuCG-----AGGUCCACGu-------CUGGGGCCau -5'
14290 5' -58.8 NC_003521.1 + 1601 0.68 0.784988
Target:  5'- ---uGC-CCacaAGGUcGCAGACCCUGGUAa -3'
miRNA:   3'- ucuuCGaGG---UCCA-CGUCUGGGGCCAU- -5'
14290 5' -58.8 NC_003521.1 + 126405 0.68 0.784988
Target:  5'- cGAAGC-CCGGGUggauGUGGGCCuuGGUc -3'
miRNA:   3'- uCUUCGaGGUCCA----CGUCUGGggCCAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.