miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14299 3' -59 NC_003521.1 + 193178 0.67 0.8396
Target:  5'- gGAGCCGGCGG-GAGC-GGCgGagcGUGAa -3'
miRNA:   3'- gUUCGGCCGCCaUUCGgUCGgC---CACU- -5'
14299 3' -59 NC_003521.1 + 150543 0.67 0.8396
Target:  5'- gGGGuCCGGCGGUGguGGUgCGGgUGGUGGc -3'
miRNA:   3'- gUUC-GGCCGCCAU--UCG-GUCgGCCACU- -5'
14299 3' -59 NC_003521.1 + 168189 0.67 0.8396
Target:  5'- uGAGCUGcUGGcccGCCAGCaCGGUGAu -3'
miRNA:   3'- gUUCGGCcGCCauuCGGUCG-GCCACU- -5'
14299 3' -59 NC_003521.1 + 218359 0.67 0.8396
Target:  5'- cCAGGCaGGCcaccGUGAGCCAggcguGCCGcGUGAa -3'
miRNA:   3'- -GUUCGgCCGc---CAUUCGGU-----CGGC-CACU- -5'
14299 3' -59 NC_003521.1 + 125151 0.67 0.8396
Target:  5'- cCAGGUCGGCGau-GGUCAGCUuGUGGu -3'
miRNA:   3'- -GUUCGGCCGCcauUCGGUCGGcCACU- -5'
14299 3' -59 NC_003521.1 + 171198 0.67 0.826875
Target:  5'- cCGAGCUGGUGcacugcucgcucugcGgcAGUCAGCgGGUGGu -3'
miRNA:   3'- -GUUCGGCCGC---------------CauUCGGUCGgCCACU- -5'
14299 3' -59 NC_003521.1 + 193301 0.67 0.823628
Target:  5'- gGAGUCGGCGcGgggguGGUgGGCaCGGUGGg -3'
miRNA:   3'- gUUCGGCCGC-Cau---UCGgUCG-GCCACU- -5'
14299 3' -59 NC_003521.1 + 170302 0.67 0.814569
Target:  5'- cCGAGCgcgaGGCGGUcacgucgguguuuAAG-CGGCUGGUGAu -3'
miRNA:   3'- -GUUCGg---CCGCCA-------------UUCgGUCGGCCACU- -5'
14299 3' -59 NC_003521.1 + 115677 0.67 0.807019
Target:  5'- gAAGaaGGCGGccAGGCggaaCAGCCGGUGu -3'
miRNA:   3'- gUUCggCCGCCa-UUCG----GUCGGCCACu -5'
14299 3' -59 NC_003521.1 + 109526 0.67 0.806173
Target:  5'- --cGCCGaCGGUGuuccugguaGGCCcgacguagguucuGGCCGGUGAa -3'
miRNA:   3'- guuCGGCcGCCAU---------UCGG-------------UCGGCCACU- -5'
14299 3' -59 NC_003521.1 + 95546 0.67 0.798493
Target:  5'- --cGCCGGCGcGcGAGCUGGCCGccGAg -3'
miRNA:   3'- guuCGGCCGC-CaUUCGGUCGGCcaCU- -5'
14299 3' -59 NC_003521.1 + 148440 0.67 0.798493
Target:  5'- gGAGCCGGCGG--AGCgacggCAGCgGGcGAg -3'
miRNA:   3'- gUUCGGCCGCCauUCG-----GUCGgCCaCU- -5'
14299 3' -59 NC_003521.1 + 113365 0.67 0.796771
Target:  5'- --cGCUGGCGGgcgucaacaacGGCCAGCUGGccGAc -3'
miRNA:   3'- guuCGGCCGCCau---------UCGGUCGGCCa-CU- -5'
14299 3' -59 NC_003521.1 + 195343 0.68 0.789829
Target:  5'- aAGGCUgccguGGUGGUGGGCCGGgugaaGGUGAc -3'
miRNA:   3'- gUUCGG-----CCGCCAUUCGGUCgg---CCACU- -5'
14299 3' -59 NC_003521.1 + 236439 0.68 0.789829
Target:  5'- aCGAGCgGGUGaGUGAGCgAGCgGGa-- -3'
miRNA:   3'- -GUUCGgCCGC-CAUUCGgUCGgCCacu -5'
14299 3' -59 NC_003521.1 + 172573 0.68 0.789829
Target:  5'- gGGGUCGGCGGUc-GCaCcGCCaGGUGAa -3'
miRNA:   3'- gUUCGGCCGCCAuuCG-GuCGG-CCACU- -5'
14299 3' -59 NC_003521.1 + 101922 0.68 0.789829
Target:  5'- cCGAGCCGGCGua---CUcGCCGGUGGg -3'
miRNA:   3'- -GUUCGGCCGCcauucGGuCGGCCACU- -5'
14299 3' -59 NC_003521.1 + 180809 0.68 0.789829
Target:  5'- gAGGCCGGUGcuGUcgcgcugcugcAGGCU-GCCGGUGAa -3'
miRNA:   3'- gUUCGGCCGC--CA-----------UUCGGuCGGCCACU- -5'
14299 3' -59 NC_003521.1 + 111577 0.68 0.789829
Target:  5'- uGAGCCGGCGGguu-CCGGaCUGcGUGGu -3'
miRNA:   3'- gUUCGGCCGCCauucGGUC-GGC-CACU- -5'
14299 3' -59 NC_003521.1 + 88677 0.68 0.789829
Target:  5'- uGGGCCGGCGGc---CCGGCuCGGgGAc -3'
miRNA:   3'- gUUCGGCCGCCauucGGUCG-GCCaCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.