Results 21 - 40 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14299 | 3' | -59 | NC_003521.1 | + | 102974 | 0.66 | 0.862247 |
Target: 5'- gGGGCUcuGGCGGggcGGcCCAGCCGcggcGUGAg -3' miRNA: 3'- gUUCGG--CCGCCau-UC-GGUCGGC----CACU- -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 220409 | 0.66 | 0.862247 |
Target: 5'- cCAGGCCGaaGGUGaaGGCCAGCUGa--- -3' miRNA: 3'- -GUUCGGCcgCCAU--UCGGUCGGCcacu -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 58734 | 0.66 | 0.862247 |
Target: 5'- cCAGG-CGGCGGUGcagcAGCCAcuGCgGGcUGAg -3' miRNA: 3'- -GUUCgGCCGCCAU----UCGGU--CGgCC-ACU- -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 221650 | 0.66 | 0.862247 |
Target: 5'- --cGCCcGCGGUGuAGCCAGgccucucuuUCGGUGGu -3' miRNA: 3'- guuCGGcCGCCAU-UCGGUC---------GGCCACU- -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 235509 | 0.66 | 0.861518 |
Target: 5'- -cGGCCGGCGGggcacGCCGccccgcgaaacauGCCGGg-- -3' miRNA: 3'- guUCGGCCGCCauu--CGGU-------------CGGCCacu -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 46757 | 0.66 | 0.861518 |
Target: 5'- -cAGCUGGUGGUAgcAGCUgauacggGGCaCGGUGu -3' miRNA: 3'- guUCGGCCGCCAU--UCGG-------UCG-GCCACu -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 235226 | 0.66 | 0.854881 |
Target: 5'- -uGGCUcugGGUGGUGaaGGaauacaCGGCCGGUGAu -3' miRNA: 3'- guUCGG---CCGCCAU--UCg-----GUCGGCCACU- -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 74909 | 0.66 | 0.854881 |
Target: 5'- --uGgCGGCGGUgGAGUCGGCCcggcagcgcggGGUGGu -3' miRNA: 3'- guuCgGCCGCCA-UUCGGUCGG-----------CCACU- -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 184947 | 0.66 | 0.854881 |
Target: 5'- uCGAGCacauguacuucgCGGCGGUGcgGGCCAGCgUGGa-- -3' miRNA: 3'- -GUUCG------------GCCGCCAU--UCGGUCG-GCCacu -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 166100 | 0.66 | 0.854881 |
Target: 5'- gCGGGCCGGCaGGUucacgcGGGCCugcuucagggcGGCCGGc-- -3' miRNA: 3'- -GUUCGGCCG-CCA------UUCGG-----------UCGGCCacu -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 207354 | 0.66 | 0.854881 |
Target: 5'- uCGGGUCGGCGc--GGCCGGCCGa--- -3' miRNA: 3'- -GUUCGGCCGCcauUCGGUCGGCcacu -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 113964 | 0.66 | 0.854134 |
Target: 5'- gAGGCagacagaCGGCaGgcGGCCGGCCGGg-- -3' miRNA: 3'- gUUCG-------GCCGcCauUCGGUCGGCCacu -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 221708 | 0.66 | 0.84733 |
Target: 5'- cCGAGCaCGcaGUGGUAcguGCCGGCCgucugGGUGAu -3' miRNA: 3'- -GUUCG-GC--CGCCAUu--CGGUCGG-----CCACU- -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 76200 | 0.66 | 0.84733 |
Target: 5'- gAGGCggucgCGGUGGUGguaugaguGGCggCGGCCGGUGGc -3' miRNA: 3'- gUUCG-----GCCGCCAU--------UCG--GUCGGCCACU- -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 31619 | 0.66 | 0.84733 |
Target: 5'- uCAGG-UGGCGGauGGCCGGuaGGUGGa -3' miRNA: 3'- -GUUCgGCCGCCauUCGGUCggCCACU- -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 59345 | 0.66 | 0.846565 |
Target: 5'- uGAGCCacgccacgcugcaGGCGGcgcGCCAGCCGcUGGa -3' miRNA: 3'- gUUCGG-------------CCGCCauuCGGUCGGCcACU- -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 33238 | 0.67 | 0.842713 |
Target: 5'- -cAGCCGGCGuUGAGCUggcacacgcgcagcaGGCCGGc-- -3' miRNA: 3'- guUCGGCCGCcAUUCGG---------------UCGGCCacu -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 148375 | 0.67 | 0.8396 |
Target: 5'- gCAAGCCGaGCGGggugcggggAGGCUGGggGGUGAg -3' miRNA: 3'- -GUUCGGC-CGCCa--------UUCGGUCggCCACU- -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 193178 | 0.67 | 0.8396 |
Target: 5'- gGAGCCGGCGG-GAGC-GGCgGagcGUGAa -3' miRNA: 3'- gUUCGGCCGCCaUUCGgUCGgC---CACU- -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 125151 | 0.67 | 0.8396 |
Target: 5'- cCAGGUCGGCGau-GGUCAGCUuGUGGu -3' miRNA: 3'- -GUUCGGCCGCcauUCGGUCGGcCACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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