miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14299 3' -59 NC_003521.1 + 221650 0.66 0.862247
Target:  5'- --cGCCcGCGGUGuAGCCAGgccucucuuUCGGUGGu -3'
miRNA:   3'- guuCGGcCGCCAU-UCGGUC---------GGCCACU- -5'
14299 3' -59 NC_003521.1 + 220409 0.66 0.862247
Target:  5'- cCAGGCCGaaGGUGaaGGCCAGCUGa--- -3'
miRNA:   3'- -GUUCGGCcgCCAU--UCGGUCGGCcacu -5'
14299 3' -59 NC_003521.1 + 102974 0.66 0.862247
Target:  5'- gGGGCUcuGGCGGggcGGcCCAGCCGcggcGUGAg -3'
miRNA:   3'- gUUCGG--CCGCCau-UC-GGUCGGC----CACU- -5'
14299 3' -59 NC_003521.1 + 58734 0.66 0.862247
Target:  5'- cCAGG-CGGCGGUGcagcAGCCAcuGCgGGcUGAg -3'
miRNA:   3'- -GUUCgGCCGCCAU----UCGGU--CGgCC-ACU- -5'
14299 3' -59 NC_003521.1 + 235509 0.66 0.861518
Target:  5'- -cGGCCGGCGGggcacGCCGccccgcgaaacauGCCGGg-- -3'
miRNA:   3'- guUCGGCCGCCauu--CGGU-------------CGGCCacu -5'
14299 3' -59 NC_003521.1 + 46757 0.66 0.861518
Target:  5'- -cAGCUGGUGGUAgcAGCUgauacggGGCaCGGUGu -3'
miRNA:   3'- guUCGGCCGCCAU--UCGG-------UCG-GCCACu -5'
14299 3' -59 NC_003521.1 + 166100 0.66 0.854881
Target:  5'- gCGGGCCGGCaGGUucacgcGGGCCugcuucagggcGGCCGGc-- -3'
miRNA:   3'- -GUUCGGCCG-CCA------UUCGG-----------UCGGCCacu -5'
14299 3' -59 NC_003521.1 + 207354 0.66 0.854881
Target:  5'- uCGGGUCGGCGc--GGCCGGCCGa--- -3'
miRNA:   3'- -GUUCGGCCGCcauUCGGUCGGCcacu -5'
14299 3' -59 NC_003521.1 + 74909 0.66 0.854881
Target:  5'- --uGgCGGCGGUgGAGUCGGCCcggcagcgcggGGUGGu -3'
miRNA:   3'- guuCgGCCGCCA-UUCGGUCGG-----------CCACU- -5'
14299 3' -59 NC_003521.1 + 235226 0.66 0.854881
Target:  5'- -uGGCUcugGGUGGUGaaGGaauacaCGGCCGGUGAu -3'
miRNA:   3'- guUCGG---CCGCCAU--UCg-----GUCGGCCACU- -5'
14299 3' -59 NC_003521.1 + 184947 0.66 0.854881
Target:  5'- uCGAGCacauguacuucgCGGCGGUGcgGGCCAGCgUGGa-- -3'
miRNA:   3'- -GUUCG------------GCCGCCAU--UCGGUCG-GCCacu -5'
14299 3' -59 NC_003521.1 + 113964 0.66 0.854134
Target:  5'- gAGGCagacagaCGGCaGgcGGCCGGCCGGg-- -3'
miRNA:   3'- gUUCG-------GCCGcCauUCGGUCGGCCacu -5'
14299 3' -59 NC_003521.1 + 76200 0.66 0.84733
Target:  5'- gAGGCggucgCGGUGGUGguaugaguGGCggCGGCCGGUGGc -3'
miRNA:   3'- gUUCG-----GCCGCCAU--------UCG--GUCGGCCACU- -5'
14299 3' -59 NC_003521.1 + 221708 0.66 0.84733
Target:  5'- cCGAGCaCGcaGUGGUAcguGCCGGCCgucugGGUGAu -3'
miRNA:   3'- -GUUCG-GC--CGCCAUu--CGGUCGG-----CCACU- -5'
14299 3' -59 NC_003521.1 + 31619 0.66 0.84733
Target:  5'- uCAGG-UGGCGGauGGCCGGuaGGUGGa -3'
miRNA:   3'- -GUUCgGCCGCCauUCGGUCggCCACU- -5'
14299 3' -59 NC_003521.1 + 59345 0.66 0.846565
Target:  5'- uGAGCCacgccacgcugcaGGCGGcgcGCCAGCCGcUGGa -3'
miRNA:   3'- gUUCGG-------------CCGCCauuCGGUCGGCcACU- -5'
14299 3' -59 NC_003521.1 + 33238 0.67 0.842713
Target:  5'- -cAGCCGGCGuUGAGCUggcacacgcgcagcaGGCCGGc-- -3'
miRNA:   3'- guUCGGCCGCcAUUCGG---------------UCGGCCacu -5'
14299 3' -59 NC_003521.1 + 170715 0.67 0.8396
Target:  5'- -cGGCCcuucGGCGGcacGCCGGCCaGGUGc -3'
miRNA:   3'- guUCGG----CCGCCauuCGGUCGG-CCACu -5'
14299 3' -59 NC_003521.1 + 193178 0.67 0.8396
Target:  5'- gGAGCCGGCGG-GAGC-GGCgGagcGUGAa -3'
miRNA:   3'- gUUCGGCCGCCaUUCGgUCGgC---CACU- -5'
14299 3' -59 NC_003521.1 + 148375 0.67 0.8396
Target:  5'- gCAAGCCGaGCGGggugcggggAGGCUGGggGGUGAg -3'
miRNA:   3'- -GUUCGGC-CGCCa--------UUCGGUCggCCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.