miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14299 3' -59 NC_003521.1 + 155399 0.71 0.599777
Target:  5'- gAGGCCGGCGGggGGCUGGgcaCCGGa-- -3'
miRNA:   3'- gUUCGGCCGCCauUCGGUC---GGCCacu -5'
14299 3' -59 NC_003521.1 + 128427 0.71 0.599777
Target:  5'- -cGGCCGGuCGGcgcacugcGCCAGCCaGGUGGa -3'
miRNA:   3'- guUCGGCC-GCCauu-----CGGUCGG-CCACU- -5'
14299 3' -59 NC_003521.1 + 77035 0.71 0.616396
Target:  5'- gAGGCCGGCGGUGGuggcGCCGcuaccguuguugccGCCGccGUGAg -3'
miRNA:   3'- gUUCGGCCGCCAUU----CGGU--------------CGGC--CACU- -5'
14299 3' -59 NC_003521.1 + 198264 0.71 0.619333
Target:  5'- -cGGCCGcCGGacAGCCAGCCGGg-- -3'
miRNA:   3'- guUCGGCcGCCauUCGGUCGGCCacu -5'
14299 3' -59 NC_003521.1 + 103279 0.71 0.619333
Target:  5'- -cGGCCGGCGccgucucgucGUAGGCCAccacgcGCCGGUa- -3'
miRNA:   3'- guUCGGCCGC----------CAUUCGGU------CGGCCAcu -5'
14299 3' -59 NC_003521.1 + 187604 0.71 0.629127
Target:  5'- --uGCCGGUGGgcacGGCCuGCCGGg-- -3'
miRNA:   3'- guuCGGCCGCCau--UCGGuCGGCCacu -5'
14299 3' -59 NC_003521.1 + 28464 0.71 0.629127
Target:  5'- -cAGCCuugGGCGGUGcaCCAGCgGGUGGu -3'
miRNA:   3'- guUCGG---CCGCCAUucGGUCGgCCACU- -5'
14299 3' -59 NC_003521.1 + 148438 0.7 0.648715
Target:  5'- --cGCCGGCGGcuccaGGGgUGGCCGGUGc -3'
miRNA:   3'- guuCGGCCGCCa----UUCgGUCGGCCACu -5'
14299 3' -59 NC_003521.1 + 213031 0.7 0.648715
Target:  5'- gCGAGCCGGCc--GAGCgGGCCGGa-- -3'
miRNA:   3'- -GUUCGGCCGccaUUCGgUCGGCCacu -5'
14299 3' -59 NC_003521.1 + 91961 0.7 0.658494
Target:  5'- cCAGGCUGGCGu--AGCUGGCgCGGUGc -3'
miRNA:   3'- -GUUCGGCCGCcauUCGGUCG-GCCACu -5'
14299 3' -59 NC_003521.1 + 97125 0.7 0.658494
Target:  5'- aAGGCgCGGCGGUAGcugucgacgcacGCCAGCUuccaguggucguGGUGGa -3'
miRNA:   3'- gUUCG-GCCGCCAUU------------CGGUCGG------------CCACU- -5'
14299 3' -59 NC_003521.1 + 238511 0.7 0.667279
Target:  5'- gAGGCCGGCgcgagcaGGUGcgagagcucgucGGCCAGCgGGUaGAg -3'
miRNA:   3'- gUUCGGCCG-------CCAU------------UCGGUCGgCCA-CU- -5'
14299 3' -59 NC_003521.1 + 224370 0.7 0.667279
Target:  5'- gAGGCCGGCccggaacagcucGuGUAgaucgucGGCCAGCCGGUa- -3'
miRNA:   3'- gUUCGGCCG------------C-CAU-------UCGGUCGGCCAcu -5'
14299 3' -59 NC_003521.1 + 203024 0.7 0.668254
Target:  5'- aCGGGuUCGGCGGUGA--UAGCCGGUGc -3'
miRNA:   3'- -GUUC-GGCCGCCAUUcgGUCGGCCACu -5'
14299 3' -59 NC_003521.1 + 86996 0.7 0.668254
Target:  5'- gGAGgCGGCGGUGaugagGGCCAcguGCUGGaUGAc -3'
miRNA:   3'- gUUCgGCCGCCAU-----UCGGU---CGGCC-ACU- -5'
14299 3' -59 NC_003521.1 + 38283 0.7 0.677988
Target:  5'- gAGGCCGGCgcgcagcaGGUGcgagagcucgucGGCCAGCgGGUaGAg -3'
miRNA:   3'- gUUCGGCCG--------CCAU------------UCGGUCGgCCA-CU- -5'
14299 3' -59 NC_003521.1 + 138904 0.7 0.677988
Target:  5'- ---aCCGGCGaGUAcGCCGGCuCGGUGu -3'
miRNA:   3'- guucGGCCGC-CAUuCGGUCG-GCCACu -5'
14299 3' -59 NC_003521.1 + 19116 0.7 0.687686
Target:  5'- aCGAcGCgGGUGGcGGGCC-GCCGGUGu -3'
miRNA:   3'- -GUU-CGgCCGCCaUUCGGuCGGCCACu -5'
14299 3' -59 NC_003521.1 + 122507 0.7 0.687686
Target:  5'- aGGGCCaacgcggcGGCGGgcaGGCCGGCggCGGUGGu -3'
miRNA:   3'- gUUCGG--------CCGCCau-UCGGUCG--GCCACU- -5'
14299 3' -59 NC_003521.1 + 32357 0.69 0.697343
Target:  5'- gGAGCCGGCGGgacgGGGCUu-UUGGUGGc -3'
miRNA:   3'- gUUCGGCCGCCa---UUCGGucGGCCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.