Results 21 - 40 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14299 | 3' | -59 | NC_003521.1 | + | 17774 | 0.66 | 0.876403 |
Target: 5'- --cGCCGGCGGc-GGaCGGUCaGGUGAa -3' miRNA: 3'- guuCGGCCGCCauUCgGUCGG-CCACU- -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 99351 | 0.66 | 0.876403 |
Target: 5'- gAGGaaGGCGGUGAGgCugcuguuguuGCUGGUGGu -3' miRNA: 3'- gUUCggCCGCCAUUCgGu---------CGGCCACU- -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 101130 | 0.66 | 0.876403 |
Target: 5'- gCGGGUCGGCGGgcacgcggaAAGCgCGGCgCGGUc- -3' miRNA: 3'- -GUUCGGCCGCCa--------UUCG-GUCG-GCCAcu -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 55771 | 0.66 | 0.881171 |
Target: 5'- -cGGCCGGCGGUAcAGCuCGaagaugaacuugccGCCGGc-- -3' miRNA: 3'- guUCGGCCGCCAU-UCG-GU--------------CGGCCacu -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 221650 | 0.66 | 0.862247 |
Target: 5'- --cGCCcGCGGUGuAGCCAGgccucucuuUCGGUGGu -3' miRNA: 3'- guuCGGcCGCCAU-UCGGUC---------GGCCACU- -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 58734 | 0.66 | 0.862247 |
Target: 5'- cCAGG-CGGCGGUGcagcAGCCAcuGCgGGcUGAg -3' miRNA: 3'- -GUUCgGCCGCCAU----UCGGU--CGgCC-ACU- -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 43639 | 0.66 | 0.883184 |
Target: 5'- gGAGgCGGCGGcc-GCC-GCCGGaGAg -3' miRNA: 3'- gUUCgGCCGCCauuCGGuCGGCCaCU- -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 80543 | 0.66 | 0.883184 |
Target: 5'- --uGCCGGCGG--AGCCcaGGCCGcucaUGAg -3' miRNA: 3'- guuCGGCCGCCauUCGG--UCGGCc---ACU- -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 85407 | 0.66 | 0.883184 |
Target: 5'- -uGGCCGGCaGcAGGCCu-CCGGUGc -3' miRNA: 3'- guUCGGCCGcCaUUCGGucGGCCACu -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 220409 | 0.66 | 0.862247 |
Target: 5'- cCAGGCCGaaGGUGaaGGCCAGCUGa--- -3' miRNA: 3'- -GUUCGGCcgCCAU--UCGGUCGGCcacu -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 235509 | 0.66 | 0.861518 |
Target: 5'- -cGGCCGGCGGggcacGCCGccccgcgaaacauGCCGGg-- -3' miRNA: 3'- guUCGGCCGCCauu--CGGU-------------CGGCCacu -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 229121 | 0.66 | 0.883184 |
Target: 5'- gAGGCCGGacgaGGaaUGAGCCGG-UGGUGc -3' miRNA: 3'- gUUCGGCCg---CC--AUUCGGUCgGCCACu -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 89735 | 0.66 | 0.869423 |
Target: 5'- uGGGCacgggGGCGGUGAcGgCAGCCGGc-- -3' miRNA: 3'- gUUCGg----CCGCCAUU-CgGUCGGCCacu -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 124196 | 0.66 | 0.883184 |
Target: 5'- -cGGCUGGgGGUGAGCgGGCCc---- -3' miRNA: 3'- guUCGGCCgCCAUUCGgUCGGccacu -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 152900 | 0.66 | 0.869423 |
Target: 5'- gCAuGcCCGGCGcGgcGGCCAGCCaGGa-- -3' miRNA: 3'- -GUuC-GGCCGC-CauUCGGUCGG-CCacu -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 26105 | 0.66 | 0.869423 |
Target: 5'- gGAGUCGGCcaGGUAgaguucGGCgGGCCGGcUGc -3' miRNA: 3'- gUUCGGCCG--CCAU------UCGgUCGGCC-ACu -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 193301 | 0.67 | 0.823628 |
Target: 5'- gGAGUCGGCGcGgggguGGUgGGCaCGGUGGg -3' miRNA: 3'- gUUCGGCCGC-Cau---UCGgUCG-GCCACU- -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 115677 | 0.67 | 0.807019 |
Target: 5'- gAAGaaGGCGGccAGGCggaaCAGCCGGUGu -3' miRNA: 3'- gUUCggCCGCCa-UUCG----GUCGGCCACu -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 193178 | 0.67 | 0.8396 |
Target: 5'- gGAGCCGGCGG-GAGC-GGCgGagcGUGAa -3' miRNA: 3'- gUUCGGCCGCCaUUCGgUCGgC---CACU- -5' |
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14299 | 3' | -59 | NC_003521.1 | + | 148375 | 0.67 | 0.8396 |
Target: 5'- gCAAGCCGaGCGGggugcggggAGGCUGGggGGUGAg -3' miRNA: 3'- -GUUCGGC-CGCCa--------UUCGGUCggCCACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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