miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14299 3' -59 NC_003521.1 + 124196 0.66 0.883184
Target:  5'- -cGGCUGGgGGUGAGCgGGCCc---- -3'
miRNA:   3'- guUCGGCCgCCAUUCGgUCGGccacu -5'
14299 3' -59 NC_003521.1 + 207354 0.66 0.854881
Target:  5'- uCGGGUCGGCGc--GGCCGGCCGa--- -3'
miRNA:   3'- -GUUCGGCCGCcauUCGGUCGGCcacu -5'
14299 3' -59 NC_003521.1 + 166100 0.66 0.854881
Target:  5'- gCGGGCCGGCaGGUucacgcGGGCCugcuucagggcGGCCGGc-- -3'
miRNA:   3'- -GUUCGGCCG-CCA------UUCGG-----------UCGGCCacu -5'
14299 3' -59 NC_003521.1 + 113964 0.66 0.854134
Target:  5'- gAGGCagacagaCGGCaGgcGGCCGGCCGGg-- -3'
miRNA:   3'- gUUCG-------GCCGcCauUCGGUCGGCCacu -5'
14299 3' -59 NC_003521.1 + 31619 0.66 0.84733
Target:  5'- uCAGG-UGGCGGauGGCCGGuaGGUGGa -3'
miRNA:   3'- -GUUCgGCCGCCauUCGGUCggCCACU- -5'
14299 3' -59 NC_003521.1 + 59345 0.66 0.846565
Target:  5'- uGAGCCacgccacgcugcaGGCGGcgcGCCAGCCGcUGGa -3'
miRNA:   3'- gUUCGG-------------CCGCCauuCGGUCGGCcACU- -5'
14299 3' -59 NC_003521.1 + 55771 0.66 0.881171
Target:  5'- -cGGCCGGCGGUAcAGCuCGaagaugaacuugccGCCGGc-- -3'
miRNA:   3'- guUCGGCCGCCAU-UCG-GU--------------CGGCCacu -5'
14299 3' -59 NC_003521.1 + 235509 0.66 0.861518
Target:  5'- -cGGCCGGCGGggcacGCCGccccgcgaaacauGCCGGg-- -3'
miRNA:   3'- guUCGGCCGCCauu--CGGU-------------CGGCCacu -5'
14299 3' -59 NC_003521.1 + 46757 0.66 0.861518
Target:  5'- -cAGCUGGUGGUAgcAGCUgauacggGGCaCGGUGu -3'
miRNA:   3'- guUCGGCCGCCAU--UCGG-------UCG-GCCACu -5'
14299 3' -59 NC_003521.1 + 43639 0.66 0.883184
Target:  5'- gGAGgCGGCGGcc-GCC-GCCGGaGAg -3'
miRNA:   3'- gUUCgGCCGCCauuCGGuCGGCCaCU- -5'
14299 3' -59 NC_003521.1 + 229121 0.66 0.883184
Target:  5'- gAGGCCGGacgaGGaaUGAGCCGG-UGGUGc -3'
miRNA:   3'- gUUCGGCCg---CC--AUUCGGUCgGCCACu -5'
14299 3' -59 NC_003521.1 + 220409 0.66 0.862247
Target:  5'- cCAGGCCGaaGGUGaaGGCCAGCUGa--- -3'
miRNA:   3'- -GUUCGGCcgCCAU--UCGGUCGGCcacu -5'
14299 3' -59 NC_003521.1 + 101130 0.66 0.876403
Target:  5'- gCGGGUCGGCGGgcacgcggaAAGCgCGGCgCGGUc- -3'
miRNA:   3'- -GUUCGGCCGCCa--------UUCG-GUCG-GCCAcu -5'
14299 3' -59 NC_003521.1 + 80543 0.66 0.883184
Target:  5'- --uGCCGGCGG--AGCCcaGGCCGcucaUGAg -3'
miRNA:   3'- guuCGGCCGCCauUCGG--UCGGCc---ACU- -5'
14299 3' -59 NC_003521.1 + 85407 0.66 0.883184
Target:  5'- -uGGCCGGCaGcAGGCCu-CCGGUGc -3'
miRNA:   3'- guUCGGCCGcCaUUCGGucGGCCACu -5'
14299 3' -59 NC_003521.1 + 58734 0.66 0.862247
Target:  5'- cCAGG-CGGCGGUGcagcAGCCAcuGCgGGcUGAg -3'
miRNA:   3'- -GUUCgGCCGCCAU----UCGGU--CGgCC-ACU- -5'
14299 3' -59 NC_003521.1 + 17774 0.66 0.876403
Target:  5'- --cGCCGGCGGc-GGaCGGUCaGGUGAa -3'
miRNA:   3'- guuCGGCCGCCauUCgGUCGG-CCACU- -5'
14299 3' -59 NC_003521.1 + 99351 0.66 0.876403
Target:  5'- gAGGaaGGCGGUGAGgCugcuguuguuGCUGGUGGu -3'
miRNA:   3'- gUUCggCCGCCAUUCgGu---------CGGCCACU- -5'
14299 3' -59 NC_003521.1 + 221650 0.66 0.862247
Target:  5'- --cGCCcGCGGUGuAGCCAGgccucucuuUCGGUGGu -3'
miRNA:   3'- guuCGGcCGCCAU-UCGGUC---------GGCCACU- -5'
14299 3' -59 NC_003521.1 + 26105 0.66 0.869423
Target:  5'- gGAGUCGGCcaGGUAgaguucGGCgGGCCGGcUGc -3'
miRNA:   3'- gUUCGGCCG--CCAU------UCGgUCGGCC-ACu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.