miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14299 3' -59 NC_003521.1 + 240027 0.69 0.735388
Target:  5'- gAGGCuCGGCGGggcGCCGGgCGGUc- -3'
miRNA:   3'- gUUCG-GCCGCCauuCGGUCgGCCAcu -5'
14299 3' -59 NC_003521.1 + 138904 0.7 0.677988
Target:  5'- ---aCCGGCGaGUAcGCCGGCuCGGUGu -3'
miRNA:   3'- guucGGCCGC-CAUuCGGUCG-GCCACu -5'
14299 3' -59 NC_003521.1 + 32357 0.69 0.697343
Target:  5'- gGAGCCGGCGGgacgGGGCUu-UUGGUGGc -3'
miRNA:   3'- gUUCGGCCGCCa---UUCGGucGGCCACU- -5'
14299 3' -59 NC_003521.1 + 217404 0.69 0.697343
Target:  5'- cCAGGCUGaGCGGc-GGCaugaAGCCGGUGc -3'
miRNA:   3'- -GUUCGGC-CGCCauUCGg---UCGGCCACu -5'
14299 3' -59 NC_003521.1 + 28537 0.69 0.705032
Target:  5'- cCAuGCCGGCcuucgcccuGGCCAGCCuGGUGGa -3'
miRNA:   3'- -GUuCGGCCGccau-----UCGGUCGG-CCACU- -5'
14299 3' -59 NC_003521.1 + 168738 0.69 0.706949
Target:  5'- ---aUCGGCGGUcAGCaCGGCCuGGUGGu -3'
miRNA:   3'- guucGGCCGCCAuUCG-GUCGG-CCACU- -5'
14299 3' -59 NC_003521.1 + 138702 0.69 0.716498
Target:  5'- uGAGCCugGGCGGcacgGGcGCUGGCUGGUGGu -3'
miRNA:   3'- gUUCGG--CCGCCa---UU-CGGUCGGCCACU- -5'
14299 3' -59 NC_003521.1 + 207040 0.69 0.716498
Target:  5'- -cAGUCGGUGGcUGGGCCgcaGGCCGGa-- -3'
miRNA:   3'- guUCGGCCGCC-AUUCGG---UCGGCCacu -5'
14299 3' -59 NC_003521.1 + 36833 0.69 0.732574
Target:  5'- aCGGGCCGGCgcugcugugccgGGUAgagcaccugacgugGGCCGGCaagcgGGUGAc -3'
miRNA:   3'- -GUUCGGCCG------------CCAU--------------UCGGUCGg----CCACU- -5'
14299 3' -59 NC_003521.1 + 86996 0.7 0.668254
Target:  5'- gGAGgCGGCGGUGaugagGGCCAcguGCUGGaUGAc -3'
miRNA:   3'- gUUCgGCCGCCAU-----UCGGU---CGGCC-ACU- -5'
14299 3' -59 NC_003521.1 + 238511 0.7 0.667279
Target:  5'- gAGGCCGGCgcgagcaGGUGcgagagcucgucGGCCAGCgGGUaGAg -3'
miRNA:   3'- gUUCGGCCG-------CCAU------------UCGGUCGgCCA-CU- -5'
14299 3' -59 NC_003521.1 + 224370 0.7 0.667279
Target:  5'- gAGGCCGGCccggaacagcucGuGUAgaucgucGGCCAGCCGGUa- -3'
miRNA:   3'- gUUCGGCCG------------C-CAU-------UCGGUCGGCCAcu -5'
14299 3' -59 NC_003521.1 + 201205 0.76 0.33041
Target:  5'- gAGGCCGGCGGUcugcucccgcuGGGCCGGCCGu--- -3'
miRNA:   3'- gUUCGGCCGCCA-----------UUCGGUCGGCcacu -5'
14299 3' -59 NC_003521.1 + 126596 0.73 0.485855
Target:  5'- --uGCCGGUGGUAGuGCgggaAGUCGGUGAu -3'
miRNA:   3'- guuCGGCCGCCAUU-CGg---UCGGCCACU- -5'
14299 3' -59 NC_003521.1 + 200313 0.72 0.541827
Target:  5'- gCGGGCCGGcCGGUcggacguguuucGGGCCGGCgGGUc- -3'
miRNA:   3'- -GUUCGGCC-GCCA------------UUCGGUCGgCCAcu -5'
14299 3' -59 NC_003521.1 + 218629 0.72 0.560978
Target:  5'- --cGCgCGGCGGUAAGCggccaCGGCCGGcGGc -3'
miRNA:   3'- guuCG-GCCGCCAUUCG-----GUCGGCCaCU- -5'
14299 3' -59 NC_003521.1 + 102796 0.71 0.599777
Target:  5'- --cGCCGGCGGcc-GCCAGCuCGGg-- -3'
miRNA:   3'- guuCGGCCGCCauuCGGUCG-GCCacu -5'
14299 3' -59 NC_003521.1 + 103279 0.71 0.619333
Target:  5'- -cGGCCGGCGccgucucgucGUAGGCCAccacgcGCCGGUa- -3'
miRNA:   3'- guUCGGCCGC----------CAUUCGGU------CGGCCAcu -5'
14299 3' -59 NC_003521.1 + 148438 0.7 0.648715
Target:  5'- --cGCCGGCGGcuccaGGGgUGGCCGGUGc -3'
miRNA:   3'- guuCGGCCGCCa----UUCgGUCGGCCACu -5'
14299 3' -59 NC_003521.1 + 213031 0.7 0.648715
Target:  5'- gCGAGCCGGCc--GAGCgGGCCGGa-- -3'
miRNA:   3'- -GUUCGGCCGccaUUCGgUCGGCCacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.