miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14299 3' -59 NC_003521.1 + 40760 1.08 0.002611
Target:  5'- cCAAGCCGGCGGUAAGCCAGCCGGUGAg -3'
miRNA:   3'- -GUUCGGCCGCCAUUCGGUCGGCCACU- -5'
14299 3' -59 NC_003521.1 + 198264 0.71 0.619333
Target:  5'- -cGGCCGcCGGacAGCCAGCCGGg-- -3'
miRNA:   3'- guUCGGCcGCCauUCGGUCGGCCacu -5'
14299 3' -59 NC_003521.1 + 28464 0.71 0.629127
Target:  5'- -cAGCCuugGGCGGUGcaCCAGCgGGUGGu -3'
miRNA:   3'- guUCGG---CCGCCAUucGGUCGgCCACU- -5'
14299 3' -59 NC_003521.1 + 229121 0.66 0.883184
Target:  5'- gAGGCCGGacgaGGaaUGAGCCGG-UGGUGc -3'
miRNA:   3'- gUUCGGCCg---CC--AUUCGGUCgGCCACu -5'
14299 3' -59 NC_003521.1 + 119214 0.75 0.407542
Target:  5'- --cGCCaGGUGGUGagcgccAGCCAGCUGGUGu -3'
miRNA:   3'- guuCGG-CCGCCAU------UCGGUCGGCCACu -5'
14299 3' -59 NC_003521.1 + 96864 0.74 0.441396
Target:  5'- aAGGCCgGGUGGUAGcacucGCgCAGCCGGUGc -3'
miRNA:   3'- gUUCGG-CCGCCAUU-----CG-GUCGGCCACu -5'
14299 3' -59 NC_003521.1 + 196051 0.72 0.532332
Target:  5'- aGAGCaccgGGCGGaAGGCCGGCgaGGUGGa -3'
miRNA:   3'- gUUCGg---CCGCCaUUCGGUCGg-CCACU- -5'
14299 3' -59 NC_003521.1 + 85 0.72 0.541827
Target:  5'- gCGGGCCGGcCGGUcggacguguuucGGGCCGGCgGGUc- -3'
miRNA:   3'- -GUUCGGCC-GCCA------------UUCGGUCGgCCAcu -5'
14299 3' -59 NC_003521.1 + 223067 0.72 0.560978
Target:  5'- --cGCCGGCGGUAcGGCCAGuuccCCGGc-- -3'
miRNA:   3'- guuCGGCCGCCAU-UCGGUC----GGCCacu -5'
14299 3' -59 NC_003521.1 + 77035 0.71 0.616396
Target:  5'- gAGGCCGGCGGUGGuggcGCCGcuaccguuguugccGCCGccGUGAg -3'
miRNA:   3'- gUUCGGCCGCCAUU----CGGU--------------CGGC--CACU- -5'
14299 3' -59 NC_003521.1 + 103773 0.71 0.59003
Target:  5'- gGGGCCGGgCGGUGccugagucAGCC-GCCGGUu- -3'
miRNA:   3'- gUUCGGCC-GCCAU--------UCGGuCGGCCAcu -5'
14299 3' -59 NC_003521.1 + 240634 0.72 0.541827
Target:  5'- gCGGGCCGGcCGGUcggacguguuucGGGCCGGCgGGUc- -3'
miRNA:   3'- -GUUCGGCC-GCCA------------UUCGGUCGgCCAcu -5'
14299 3' -59 NC_003521.1 + 167995 0.8 0.190773
Target:  5'- cCAGGCCGucGCGGUGAGCCugcugcuGCUGGUGGu -3'
miRNA:   3'- -GUUCGGC--CGCCAUUCGGu------CGGCCACU- -5'
14299 3' -59 NC_003521.1 + 155399 0.71 0.599777
Target:  5'- gAGGCCGGCGGggGGCUGGgcaCCGGa-- -3'
miRNA:   3'- gUUCGGCCGCCauUCGGUC---GGCCacu -5'
14299 3' -59 NC_003521.1 + 185624 0.77 0.302715
Target:  5'- gGAGCCGGCGGacuGCCAucGCCGGUc- -3'
miRNA:   3'- gUUCGGCCGCCauuCGGU--CGGCCAcu -5'
14299 3' -59 NC_003521.1 + 228257 0.72 0.541827
Target:  5'- --cGCCguGGUGGUcgguuuGGCCAGCaCGGUGAg -3'
miRNA:   3'- guuCGG--CCGCCAu-----UCGGUCG-GCCACU- -5'
14299 3' -59 NC_003521.1 + 128427 0.71 0.599777
Target:  5'- -cGGCCGGuCGGcgcacugcGCCAGCCaGGUGGa -3'
miRNA:   3'- guUCGGCC-GCCauu-----CGGUCGG-CCACU- -5'
14299 3' -59 NC_003521.1 + 187604 0.71 0.629127
Target:  5'- --uGCCGGUGGgcacGGCCuGCCGGg-- -3'
miRNA:   3'- guuCGGCCGCCau--UCGGuCGGCCacu -5'
14299 3' -59 NC_003521.1 + 978 0.76 0.323315
Target:  5'- gAGGCCGGCGGUcugcucccguGGGCCGGCCGu--- -3'
miRNA:   3'- gUUCGGCCGCCA----------UUCGGUCGGCcacu -5'
14299 3' -59 NC_003521.1 + 236257 0.73 0.504229
Target:  5'- gAGGCCGGCGuGUGccCCGGCCGuaGUGAc -3'
miRNA:   3'- gUUCGGCCGC-CAUucGGUCGGC--CACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.