miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14299 3' -59 NC_003521.1 + 85 0.72 0.541827
Target:  5'- gCGGGCCGGcCGGUcggacguguuucGGGCCGGCgGGUc- -3'
miRNA:   3'- -GUUCGGCC-GCCA------------UUCGGUCGgCCAcu -5'
14299 3' -59 NC_003521.1 + 438 1.08 0.002611
Target:  5'- cCAAGCCGGCGGUAAGCCAGCCGGUGAg -3'
miRNA:   3'- -GUUCGGCCGCCAUUCGGUCGGCCACU- -5'
14299 3' -59 NC_003521.1 + 978 0.76 0.323315
Target:  5'- gAGGCCGGCGGUcugcucccguGGGCCGGCCGu--- -3'
miRNA:   3'- gUUCGGCCGCCA----------UUCGGUCGGCcacu -5'
14299 3' -59 NC_003521.1 + 17228 0.66 0.869423
Target:  5'- --cGUCGcGCGGUauggcaagcGAGCCGGCgucuuCGGUGGa -3'
miRNA:   3'- guuCGGC-CGCCA---------UUCGGUCG-----GCCACU- -5'
14299 3' -59 NC_003521.1 + 17774 0.66 0.876403
Target:  5'- --cGCCGGCGGc-GGaCGGUCaGGUGAa -3'
miRNA:   3'- guuCGGCCGCCauUCgGUCGG-CCACU- -5'
14299 3' -59 NC_003521.1 + 19116 0.7 0.687686
Target:  5'- aCGAcGCgGGUGGcGGGCC-GCCGGUGu -3'
miRNA:   3'- -GUU-CGgCCGCCaUUCGGuCGGCCACu -5'
14299 3' -59 NC_003521.1 + 20733 0.66 0.876403
Target:  5'- --cGCUGGCGGUGcaUCAGCUGcGUGu -3'
miRNA:   3'- guuCGGCCGCCAUucGGUCGGC-CACu -5'
14299 3' -59 NC_003521.1 + 26105 0.66 0.869423
Target:  5'- gGAGUCGGCcaGGUAgaguucGGCgGGCCGGcUGc -3'
miRNA:   3'- gUUCGGCCG--CCAU------UCGgUCGGCC-ACu -5'
14299 3' -59 NC_003521.1 + 28464 0.71 0.629127
Target:  5'- -cAGCCuugGGCGGUGcaCCAGCgGGUGGu -3'
miRNA:   3'- guUCGG---CCGCCAUucGGUCGgCCACU- -5'
14299 3' -59 NC_003521.1 + 28537 0.69 0.705032
Target:  5'- cCAuGCCGGCcuucgcccuGGCCAGCCuGGUGGa -3'
miRNA:   3'- -GUuCGGCCGccau-----UCGGUCGG-CCACU- -5'
14299 3' -59 NC_003521.1 + 31619 0.66 0.84733
Target:  5'- uCAGG-UGGCGGauGGCCGGuaGGUGGa -3'
miRNA:   3'- -GUUCgGCCGCCauUCGGUCggCCACU- -5'
14299 3' -59 NC_003521.1 + 32357 0.69 0.697343
Target:  5'- gGAGCCGGCGGgacgGGGCUu-UUGGUGGc -3'
miRNA:   3'- gUUCGGCCGCCa---UUCGGucGGCCACU- -5'
14299 3' -59 NC_003521.1 + 33238 0.67 0.842713
Target:  5'- -cAGCCGGCGuUGAGCUggcacacgcgcagcaGGCCGGc-- -3'
miRNA:   3'- guUCGGCCGCcAUUCGG---------------UCGGCCacu -5'
14299 3' -59 NC_003521.1 + 36833 0.69 0.732574
Target:  5'- aCGGGCCGGCgcugcugugccgGGUAgagcaccugacgugGGCCGGCaagcgGGUGAc -3'
miRNA:   3'- -GUUCGGCCG------------CCAU--------------UCGGUCGg----CCACU- -5'
14299 3' -59 NC_003521.1 + 38283 0.7 0.677988
Target:  5'- gAGGCCGGCgcgcagcaGGUGcgagagcucgucGGCCAGCgGGUaGAg -3'
miRNA:   3'- gUUCGGCCG--------CCAU------------UCGGUCGgCCA-CU- -5'
14299 3' -59 NC_003521.1 + 39800 0.69 0.735388
Target:  5'- gAGGCuCGGCGGggcGCCGGgCGGUc- -3'
miRNA:   3'- gUUCG-GCCGCCauuCGGUCgGCCAcu -5'
14299 3' -59 NC_003521.1 + 40760 1.08 0.002611
Target:  5'- cCAAGCCGGCGGUAAGCCAGCCGGUGAg -3'
miRNA:   3'- -GUUCGGCCGCCAUUCGGUCGGCCACU- -5'
14299 3' -59 NC_003521.1 + 43639 0.66 0.883184
Target:  5'- gGAGgCGGCGGcc-GCC-GCCGGaGAg -3'
miRNA:   3'- gUUCgGCCGCCauuCGGuCGGCCaCU- -5'
14299 3' -59 NC_003521.1 + 44056 0.68 0.75395
Target:  5'- --cGCCcGCGGUcgcGCCGGCCGGg-- -3'
miRNA:   3'- guuCGGcCGCCAuu-CGGUCGGCCacu -5'
14299 3' -59 NC_003521.1 + 46757 0.66 0.861518
Target:  5'- -cAGCUGGUGGUAgcAGCUgauacggGGCaCGGUGu -3'
miRNA:   3'- guUCGGCCGCCAU--UCGG-------UCG-GCCACu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.