miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14299 3' -59 NC_003521.1 + 240634 0.72 0.541827
Target:  5'- gCGGGCCGGcCGGUcggacguguuucGGGCCGGCgGGUc- -3'
miRNA:   3'- -GUUCGGCC-GCCA------------UUCGGUCGgCCAcu -5'
14299 3' -59 NC_003521.1 + 240027 0.69 0.735388
Target:  5'- gAGGCuCGGCGGggcGCCGGgCGGUc- -3'
miRNA:   3'- gUUCG-GCCGCCauuCGGUCgGCCAcu -5'
14299 3' -59 NC_003521.1 + 238511 0.7 0.667279
Target:  5'- gAGGCCGGCgcgagcaGGUGcgagagcucgucGGCCAGCgGGUaGAg -3'
miRNA:   3'- gUUCGGCCG-------CCAU------------UCGGUCGgCCA-CU- -5'
14299 3' -59 NC_003521.1 + 236439 0.68 0.789829
Target:  5'- aCGAGCgGGUGaGUGAGCgAGCgGGa-- -3'
miRNA:   3'- -GUUCGgCCGC-CAUUCGgUCGgCCacu -5'
14299 3' -59 NC_003521.1 + 236257 0.73 0.504229
Target:  5'- gAGGCCGGCGuGUGccCCGGCCGuaGUGAc -3'
miRNA:   3'- gUUCGGCCGC-CAUucGGUCGGC--CACU- -5'
14299 3' -59 NC_003521.1 + 235509 0.66 0.861518
Target:  5'- -cGGCCGGCGGggcacGCCGccccgcgaaacauGCCGGg-- -3'
miRNA:   3'- guUCGGCCGCCauu--CGGU-------------CGGCCacu -5'
14299 3' -59 NC_003521.1 + 235226 0.66 0.854881
Target:  5'- -uGGCUcugGGUGGUGaaGGaauacaCGGCCGGUGAu -3'
miRNA:   3'- guUCGG---CCGCCAU--UCg-----GUCGGCCACU- -5'
14299 3' -59 NC_003521.1 + 229121 0.66 0.883184
Target:  5'- gAGGCCGGacgaGGaaUGAGCCGG-UGGUGc -3'
miRNA:   3'- gUUCGGCCg---CC--AUUCGGUCgGCCACu -5'
14299 3' -59 NC_003521.1 + 228257 0.72 0.541827
Target:  5'- --cGCCguGGUGGUcgguuuGGCCAGCaCGGUGAg -3'
miRNA:   3'- guuCGG--CCGCCAu-----UCGGUCG-GCCACU- -5'
14299 3' -59 NC_003521.1 + 224370 0.7 0.667279
Target:  5'- gAGGCCGGCccggaacagcucGuGUAgaucgucGGCCAGCCGGUa- -3'
miRNA:   3'- gUUCGGCCG------------C-CAU-------UCGGUCGGCCAcu -5'
14299 3' -59 NC_003521.1 + 223067 0.72 0.560978
Target:  5'- --cGCCGGCGGUAcGGCCAGuuccCCGGc-- -3'
miRNA:   3'- guuCGGCCGCCAU-UCGGUC----GGCCacu -5'
14299 3' -59 NC_003521.1 + 221708 0.66 0.84733
Target:  5'- cCGAGCaCGcaGUGGUAcguGCCGGCCgucugGGUGAu -3'
miRNA:   3'- -GUUCG-GC--CGCCAUu--CGGUCGG-----CCACU- -5'
14299 3' -59 NC_003521.1 + 221650 0.66 0.862247
Target:  5'- --cGCCcGCGGUGuAGCCAGgccucucuuUCGGUGGu -3'
miRNA:   3'- guuCGGcCGCCAU-UCGGUC---------GGCCACU- -5'
14299 3' -59 NC_003521.1 + 220409 0.66 0.862247
Target:  5'- cCAGGCCGaaGGUGaaGGCCAGCUGa--- -3'
miRNA:   3'- -GUUCGGCcgCCAU--UCGGUCGGCcacu -5'
14299 3' -59 NC_003521.1 + 218629 0.72 0.560978
Target:  5'- --cGCgCGGCGGUAAGCggccaCGGCCGGcGGc -3'
miRNA:   3'- guuCG-GCCGCCAUUCG-----GUCGGCCaCU- -5'
14299 3' -59 NC_003521.1 + 218359 0.67 0.8396
Target:  5'- cCAGGCaGGCcaccGUGAGCCAggcguGCCGcGUGAa -3'
miRNA:   3'- -GUUCGgCCGc---CAUUCGGU-----CGGC-CACU- -5'
14299 3' -59 NC_003521.1 + 217404 0.69 0.697343
Target:  5'- cCAGGCUGaGCGGc-GGCaugaAGCCGGUGc -3'
miRNA:   3'- -GUUCGGC-CGCCauUCGg---UCGGCCACu -5'
14299 3' -59 NC_003521.1 + 215024 0.68 0.753031
Target:  5'- -cGGCUGGCagcugauGGUGGGCugCAGCCGcGUGGa -3'
miRNA:   3'- guUCGGCCG-------CCAUUCG--GUCGGC-CACU- -5'
14299 3' -59 NC_003521.1 + 213031 0.7 0.648715
Target:  5'- gCGAGCCGGCc--GAGCgGGCCGGa-- -3'
miRNA:   3'- -GUUCGGCCGccaUUCGgUCGGCCacu -5'
14299 3' -59 NC_003521.1 + 212500 0.69 0.72598
Target:  5'- ---aCCGGCGGUccgcAGGCCGcGCCGGg-- -3'
miRNA:   3'- guucGGCCGCCA----UUCGGU-CGGCCacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.