miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14299 3' -59 NC_003521.1 + 52693 0.68 0.772118
Target:  5'- --cGUCGGCGGU--GCCAGCCGc--- -3'
miRNA:   3'- guuCGGCCGCCAuuCGGUCGGCcacu -5'
14299 3' -59 NC_003521.1 + 53180 0.66 0.869423
Target:  5'- gAGGUCGGCGac--GCC-GUCGGUGAa -3'
miRNA:   3'- gUUCGGCCGCcauuCGGuCGGCCACU- -5'
14299 3' -59 NC_003521.1 + 55771 0.66 0.881171
Target:  5'- -cGGCCGGCGGUAcAGCuCGaagaugaacuugccGCCGGc-- -3'
miRNA:   3'- guUCGGCCGCCAU-UCG-GU--------------CGGCCacu -5'
14299 3' -59 NC_003521.1 + 58734 0.66 0.862247
Target:  5'- cCAGG-CGGCGGUGcagcAGCCAcuGCgGGcUGAg -3'
miRNA:   3'- -GUUCgGCCGCCAU----UCGGU--CGgCC-ACU- -5'
14299 3' -59 NC_003521.1 + 59345 0.66 0.846565
Target:  5'- uGAGCCacgccacgcugcaGGCGGcgcGCCAGCCGcUGGa -3'
miRNA:   3'- gUUCGG-------------CCGCCauuCGGUCGGCcACU- -5'
14299 3' -59 NC_003521.1 + 69739 0.66 0.876403
Target:  5'- -cGGCgGGCGGgGAGgCGG-CGGUGGc -3'
miRNA:   3'- guUCGgCCGCCaUUCgGUCgGCCACU- -5'
14299 3' -59 NC_003521.1 + 74909 0.66 0.854881
Target:  5'- --uGgCGGCGGUgGAGUCGGCCcggcagcgcggGGUGGu -3'
miRNA:   3'- guuCgGCCGCCA-UUCGGUCGG-----------CCACU- -5'
14299 3' -59 NC_003521.1 + 76200 0.66 0.84733
Target:  5'- gAGGCggucgCGGUGGUGguaugaguGGCggCGGCCGGUGGc -3'
miRNA:   3'- gUUCG-----GCCGCCAU--------UCG--GUCGGCCACU- -5'
14299 3' -59 NC_003521.1 + 77035 0.71 0.616396
Target:  5'- gAGGCCGGCGGUGGuggcGCCGcuaccguuguugccGCCGccGUGAg -3'
miRNA:   3'- gUUCGGCCGCCAUU----CGGU--------------CGGC--CACU- -5'
14299 3' -59 NC_003521.1 + 80543 0.66 0.883184
Target:  5'- --uGCCGGCGG--AGCCcaGGCCGcucaUGAg -3'
miRNA:   3'- guuCGGCCGCCauUCGG--UCGGCc---ACU- -5'
14299 3' -59 NC_003521.1 + 85407 0.66 0.883184
Target:  5'- -uGGCCGGCaGcAGGCCu-CCGGUGc -3'
miRNA:   3'- guUCGGCCGcCaUUCGGucGGCCACu -5'
14299 3' -59 NC_003521.1 + 86349 0.69 0.716498
Target:  5'- --uGCCGGCGcc-GGCgGuGCCGGUGAc -3'
miRNA:   3'- guuCGGCCGCcauUCGgU-CGGCCACU- -5'
14299 3' -59 NC_003521.1 + 86996 0.7 0.668254
Target:  5'- gGAGgCGGCGGUGaugagGGCCAcguGCUGGaUGAc -3'
miRNA:   3'- gUUCgGCCGCCAU-----UCGGU---CGGCC-ACU- -5'
14299 3' -59 NC_003521.1 + 88677 0.68 0.789829
Target:  5'- uGGGCCGGCGGc---CCGGCuCGGgGAc -3'
miRNA:   3'- gUUCGGCCGCCauucGGUCG-GCCaCU- -5'
14299 3' -59 NC_003521.1 + 89735 0.66 0.869423
Target:  5'- uGGGCacgggGGCGGUGAcGgCAGCCGGc-- -3'
miRNA:   3'- gUUCGg----CCGCCAUU-CgGUCGGCCacu -5'
14299 3' -59 NC_003521.1 + 91961 0.7 0.658494
Target:  5'- cCAGGCUGGCGu--AGCUGGCgCGGUGc -3'
miRNA:   3'- -GUUCGGCCGCcauUCGGUCG-GCCACu -5'
14299 3' -59 NC_003521.1 + 92248 0.66 0.876403
Target:  5'- --cGCCGcGCGGUcuuuuGGCCGGUCGcGUcGAc -3'
miRNA:   3'- guuCGGC-CGCCAu----UCGGUCGGC-CA-CU- -5'
14299 3' -59 NC_003521.1 + 95546 0.67 0.798493
Target:  5'- --cGCCGGCGcGcGAGCUGGCCGccGAg -3'
miRNA:   3'- guuCGGCCGC-CaUUCGGUCGGCcaCU- -5'
14299 3' -59 NC_003521.1 + 96864 0.74 0.441396
Target:  5'- aAGGCCgGGUGGUAGcacucGCgCAGCCGGUGc -3'
miRNA:   3'- gUUCGG-CCGCCAUU-----CG-GUCGGCCACu -5'
14299 3' -59 NC_003521.1 + 97125 0.7 0.658494
Target:  5'- aAGGCgCGGCGGUAGcugucgacgcacGCCAGCUuccaguggucguGGUGGa -3'
miRNA:   3'- gUUCG-GCCGCCAUU------------CGGUCGG------------CCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.