miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14300 5' -54.1 NC_003521.1 + 138970 0.66 0.97548
Target:  5'- cAUGUAcCGCCGCcugcugccGCUCUucaUCGUGCcCGa -3'
miRNA:   3'- -UAUAUuGCGGCG--------CGAGA---AGCGCGaGC- -5'
14300 5' -54.1 NC_003521.1 + 15811 0.66 0.980124
Target:  5'- ----uGCGCCGagcgGCUCaUCGUGCUgGg -3'
miRNA:   3'- uauauUGCGGCg---CGAGaAGCGCGAgC- -5'
14300 5' -54.1 NC_003521.1 + 7774 0.66 0.982183
Target:  5'- ---aGACGCCGCagacgaGC-CUUacaccaGCGCUCGa -3'
miRNA:   3'- uauaUUGCGGCG------CGaGAAg-----CGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 136884 0.66 0.977892
Target:  5'- -gGUGGCGCCG-GUg-UUCGCGgUCGa -3'
miRNA:   3'- uaUAUUGCGGCgCGagAAGCGCgAGC- -5'
14300 5' -54.1 NC_003521.1 + 115558 0.66 0.977892
Target:  5'- ---gAGCGCCGUGCUg--CGCGgaCGu -3'
miRNA:   3'- uauaUUGCGGCGCGAgaaGCGCgaGC- -5'
14300 5' -54.1 NC_003521.1 + 135898 0.66 0.977892
Target:  5'- ---cGGCGUCGCGCUCgUCGUcaUCGu -3'
miRNA:   3'- uauaUUGCGGCGCGAGaAGCGcgAGC- -5'
14300 5' -54.1 NC_003521.1 + 43386 0.66 0.97548
Target:  5'- --cUGGCGCCGCcuggccaugGcCUCUUCGCuuUCGg -3'
miRNA:   3'- uauAUUGCGGCG---------C-GAGAAGCGcgAGC- -5'
14300 5' -54.1 NC_003521.1 + 197220 0.66 0.977892
Target:  5'- -cGUuguCGUCGCGCUCgUCGUcCUCGu -3'
miRNA:   3'- uaUAuu-GCGGCGCGAGaAGCGcGAGC- -5'
14300 5' -54.1 NC_003521.1 + 218758 0.66 0.984078
Target:  5'- ----cAUGCUGCGUUCg-CGgGCUCGg -3'
miRNA:   3'- uauauUGCGGCGCGAGaaGCgCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 183636 0.66 0.980124
Target:  5'- -gAUGACuccCUGCGCcgCUUCGUGCUgCGg -3'
miRNA:   3'- uaUAUUGc--GGCGCGa-GAAGCGCGA-GC- -5'
14300 5' -54.1 NC_003521.1 + 172152 0.66 0.980124
Target:  5'- ---cAugGCCGC-CUCUUCcaCGCUCu -3'
miRNA:   3'- uauaUugCGGCGcGAGAAGc-GCGAGc -5'
14300 5' -54.1 NC_003521.1 + 80386 0.67 0.963903
Target:  5'- -cGUGcCGUCGCGC-CUUCgGCGUUCu -3'
miRNA:   3'- uaUAUuGCGGCGCGaGAAG-CGCGAGc -5'
14300 5' -54.1 NC_003521.1 + 205686 0.67 0.963903
Target:  5'- -cGUGGCGCaccCGCGCUCagUCGCGg-CGa -3'
miRNA:   3'- uaUAUUGCG---GCGCGAGa-AGCGCgaGC- -5'
14300 5' -54.1 NC_003521.1 + 104655 0.67 0.960495
Target:  5'- ---cGACGCCGcCGcCUCUUCGgaaaacgcggaGCUCGa -3'
miRNA:   3'- uauaUUGCGGC-GC-GAGAAGCg----------CGAGC- -5'
14300 5' -54.1 NC_003521.1 + 127026 0.67 0.967099
Target:  5'- ---cGACGCCGcCGCggugCccgUCGCGCUgGc -3'
miRNA:   3'- uauaUUGCGGC-GCGa---Ga--AGCGCGAgC- -5'
14300 5' -54.1 NC_003521.1 + 137623 0.67 0.970091
Target:  5'- ---gGACGCCuacCGCUCgcgcaUCGCGgUCGa -3'
miRNA:   3'- uauaUUGCGGc--GCGAGa----AGCGCgAGC- -5'
14300 5' -54.1 NC_003521.1 + 165945 0.67 0.970091
Target:  5'- ----cGCGCagcaGCGC-CgugUCGUGCUCGg -3'
miRNA:   3'- uauauUGCGg---CGCGaGa--AGCGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 131458 0.67 0.972882
Target:  5'- ---gAAgGCCGCGCUCUcgGC-CUCGu -3'
miRNA:   3'- uauaUUgCGGCGCGAGAagCGcGAGC- -5'
14300 5' -54.1 NC_003521.1 + 128065 0.67 0.973151
Target:  5'- ----cGCGCCGCGCgaugccgcccaugggC-UCGCGCUgGa -3'
miRNA:   3'- uauauUGCGGCGCGa--------------GaAGCGCGAgC- -5'
14300 5' -54.1 NC_003521.1 + 92245 0.67 0.963903
Target:  5'- ---gGGCGCCGCGCggUCUuuuggccggUCGCG-UCGa -3'
miRNA:   3'- uauaUUGCGGCGCG--AGA---------AGCGCgAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.