Results 1 - 20 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14300 | 5' | -54.1 | NC_003521.1 | + | 218758 | 0.66 | 0.984078 |
Target: 5'- ----cAUGCUGCGUUCg-CGgGCUCGg -3' miRNA: 3'- uauauUGCGGCGCGAGaaGCgCGAGC- -5' |
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14300 | 5' | -54.1 | NC_003521.1 | + | 153008 | 0.66 | 0.980124 |
Target: 5'- ----cACGUCGCGgaUgUCGCGCUCc -3' miRNA: 3'- uauauUGCGGCGCgaGaAGCGCGAGc -5' |
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14300 | 5' | -54.1 | NC_003521.1 | + | 225760 | 0.66 | 0.980124 |
Target: 5'- cUGUuGCaGCaCGCGCcgC-UCGCGCUCGc -3' miRNA: 3'- uAUAuUG-CG-GCGCGa-GaAGCGCGAGC- -5' |
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14300 | 5' | -54.1 | NC_003521.1 | + | 28776 | 0.66 | 0.982183 |
Target: 5'- --cUAGCGCUGCaCUUUcUGCGCUCc -3' miRNA: 3'- uauAUUGCGGCGcGAGAaGCGCGAGc -5' |
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14300 | 5' | -54.1 | NC_003521.1 | + | 43118 | 0.66 | 0.982183 |
Target: 5'- ---aAGCGCUGCGg-Cga-GCGCUCGg -3' miRNA: 3'- uauaUUGCGGCGCgaGaagCGCGAGC- -5' |
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14300 | 5' | -54.1 | NC_003521.1 | + | 88956 | 0.66 | 0.982183 |
Target: 5'- ---gAGCGCCGCcagaacCUC-UCGCGuCUCGu -3' miRNA: 3'- uauaUUGCGGCGc-----GAGaAGCGC-GAGC- -5' |
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14300 | 5' | -54.1 | NC_003521.1 | + | 141741 | 0.66 | 0.982183 |
Target: 5'- ---cGACGCCGgGCUCaUCaCGCUg- -3' miRNA: 3'- uauaUUGCGGCgCGAGaAGcGCGAgc -5' |
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14300 | 5' | -54.1 | NC_003521.1 | + | 28906 | 0.66 | 0.982183 |
Target: 5'- ---aGACGCUGCGCgacuacaaCGUGCUCu -3' miRNA: 3'- uauaUUGCGGCGCGagaa----GCGCGAGc -5' |
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14300 | 5' | -54.1 | NC_003521.1 | + | 194364 | 0.66 | 0.984078 |
Target: 5'- cAUAUccuCGUCGCGCUaccgauagUCGCGaCUCGc -3' miRNA: 3'- -UAUAuu-GCGGCGCGAga------AGCGC-GAGC- -5' |
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14300 | 5' | -54.1 | NC_003521.1 | + | 74311 | 0.66 | 0.980124 |
Target: 5'- ---cGAgGCCGUGCUCUUCGguCGCc-- -3' miRNA: 3'- uauaUUgCGGCGCGAGAAGC--GCGagc -5' |
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14300 | 5' | -54.1 | NC_003521.1 | + | 129590 | 0.66 | 0.980124 |
Target: 5'- ----cGCGCCGCGCcggCcgCGaCGCUCu -3' miRNA: 3'- uauauUGCGGCGCGa--GaaGC-GCGAGc -5' |
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14300 | 5' | -54.1 | NC_003521.1 | + | 220974 | 0.66 | 0.977892 |
Target: 5'- ---gAGCGCUGCaGCUCcacgUCGCGggCGa -3' miRNA: 3'- uauaUUGCGGCG-CGAGa---AGCGCgaGC- -5' |
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14300 | 5' | -54.1 | NC_003521.1 | + | 138970 | 0.66 | 0.97548 |
Target: 5'- cAUGUAcCGCCGCcugcugccGCUCUucaUCGUGCcCGa -3' miRNA: 3'- -UAUAUuGCGGCG--------CGAGA---AGCGCGaGC- -5' |
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14300 | 5' | -54.1 | NC_003521.1 | + | 43386 | 0.66 | 0.97548 |
Target: 5'- --cUGGCGCCGCcuggccaugGcCUCUUCGCuuUCGg -3' miRNA: 3'- uauAUUGCGGCG---------C-GAGAAGCGcgAGC- -5' |
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14300 | 5' | -54.1 | NC_003521.1 | + | 154895 | 0.66 | 0.97548 |
Target: 5'- ---cGGCGCgagaaCGUGCUCUUCGaCGC-CGa -3' miRNA: 3'- uauaUUGCG-----GCGCGAGAAGC-GCGaGC- -5' |
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14300 | 5' | -54.1 | NC_003521.1 | + | 114303 | 0.66 | 0.984078 |
Target: 5'- ------gGCUGCGCUCgccuuucUCGCGCUa- -3' miRNA: 3'- uauauugCGGCGCGAGa------AGCGCGAgc -5' |
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14300 | 5' | -54.1 | NC_003521.1 | + | 94668 | 0.66 | 0.977892 |
Target: 5'- ------gGCCcaccuCGCUCUccUCGCGCUCGc -3' miRNA: 3'- uauauugCGGc----GCGAGA--AGCGCGAGC- -5' |
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14300 | 5' | -54.1 | NC_003521.1 | + | 30711 | 0.66 | 0.97548 |
Target: 5'- ---cGGCGCCGCggGCUCaugUCGCGUg-- -3' miRNA: 3'- uauaUUGCGGCG--CGAGa--AGCGCGagc -5' |
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14300 | 5' | -54.1 | NC_003521.1 | + | 2608 | 0.66 | 0.97548 |
Target: 5'- ---cGACGCCGUgccgacgcccagGCUCUUgGC-CUCGa -3' miRNA: 3'- uauaUUGCGGCG------------CGAGAAgCGcGAGC- -5' |
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14300 | 5' | -54.1 | NC_003521.1 | + | 124460 | 0.66 | 0.977892 |
Target: 5'- ---cGGCgGCaCGCGUUCgccgcCGCGCUCGc -3' miRNA: 3'- uauaUUG-CG-GCGCGAGaa---GCGCGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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