miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14300 5' -54.1 NC_003521.1 + 684 1.06 0.010182
Target:  5'- uAUAUAACGCCGCGCUCUUCGCGCUCGc -3'
miRNA:   3'- -UAUAUUGCGGCGCGAGAAGCGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 2608 0.66 0.97548
Target:  5'- ---cGACGCCGUgccgacgcccagGCUCUUgGC-CUCGa -3'
miRNA:   3'- uauaUUGCGGCG------------CGAGAAgCGcGAGC- -5'
14300 5' -54.1 NC_003521.1 + 3890 0.67 0.963903
Target:  5'- -cAUAGCGCCGUagGCUCgcggCaCGCUCu -3'
miRNA:   3'- uaUAUUGCGGCG--CGAGaa--GcGCGAGc -5'
14300 5' -54.1 NC_003521.1 + 5660 0.66 0.982183
Target:  5'- -cAUGACG-CGaCGCcaaUCGCGCUCGg -3'
miRNA:   3'- uaUAUUGCgGC-GCGagaAGCGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 6267 0.7 0.875058
Target:  5'- ---cGGCGCCaCcuCUCUUCGCGCUCu -3'
miRNA:   3'- uauaUUGCGGcGc-GAGAAGCGCGAGc -5'
14300 5' -54.1 NC_003521.1 + 7774 0.66 0.982183
Target:  5'- ---aGACGCCGCagacgaGC-CUUacaccaGCGCUCGa -3'
miRNA:   3'- uauaUUGCGGCG------CGaGAAg-----CGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 12109 0.69 0.908087
Target:  5'- uGUAUAAucaugccgcCGCCGCGCUCcUUCGgGUgCGg -3'
miRNA:   3'- -UAUAUU---------GCGGCGCGAG-AAGCgCGaGC- -5'
14300 5' -54.1 NC_003521.1 + 14390 0.68 0.953027
Target:  5'- ---gAGCuGgCGCGCUacggcgugUCGCGCUCGg -3'
miRNA:   3'- uauaUUG-CgGCGCGAga------AGCGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 15811 0.66 0.980124
Target:  5'- ----uGCGCCGagcgGCUCaUCGUGCUgGg -3'
miRNA:   3'- uauauUGCGGCg---CGAGaAGCGCGAgC- -5'
14300 5' -54.1 NC_003521.1 + 18563 0.7 0.895547
Target:  5'- -cAUcACGCgCGCGCagCUggagagCGCGCUCGa -3'
miRNA:   3'- uaUAuUGCG-GCGCGa-GAa-----GCGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 24716 0.68 0.940138
Target:  5'- ----cGCGCCGCGCUCaaccagUUCaUGCUCa -3'
miRNA:   3'- uauauUGCGGCGCGAG------AAGcGCGAGc -5'
14300 5' -54.1 NC_003521.1 + 28776 0.66 0.982183
Target:  5'- --cUAGCGCUGCaCUUUcUGCGCUCc -3'
miRNA:   3'- uauAUUGCGGCGcGAGAaGCGCGAGc -5'
14300 5' -54.1 NC_003521.1 + 28906 0.66 0.982183
Target:  5'- ---aGACGCUGCGCgacuacaaCGUGCUCu -3'
miRNA:   3'- uauaUUGCGGCGCGagaa----GCGCGAGc -5'
14300 5' -54.1 NC_003521.1 + 30711 0.66 0.97548
Target:  5'- ---cGGCGCCGCggGCUCaugUCGCGUg-- -3'
miRNA:   3'- uauaUUGCGGCG--CGAGa--AGCGCGagc -5'
14300 5' -54.1 NC_003521.1 + 36364 0.67 0.967099
Target:  5'- --cUGGCGUgGCGCggCUUCGCGUg-- -3'
miRNA:   3'- uauAUUGCGgCGCGa-GAAGCGCGagc -5'
14300 5' -54.1 NC_003521.1 + 36543 0.67 0.960495
Target:  5'- ---cAGCGCCGaGCUCUUCuuccugcuGUGCUCc -3'
miRNA:   3'- uauaUUGCGGCgCGAGAAG--------CGCGAGc -5'
14300 5' -54.1 NC_003521.1 + 37451 0.67 0.960495
Target:  5'- -gGUGACGCUGUGggC-UCGCGCgCGg -3'
miRNA:   3'- uaUAUUGCGGCGCgaGaAGCGCGaGC- -5'
14300 5' -54.1 NC_003521.1 + 43118 0.66 0.982183
Target:  5'- ---aAGCGCUGCGg-Cga-GCGCUCGg -3'
miRNA:   3'- uauaUUGCGGCGCgaGaagCGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 43386 0.66 0.97548
Target:  5'- --cUGGCGCCGCcuggccaugGcCUCUUCGCuuUCGg -3'
miRNA:   3'- uauAUUGCGGCG---------C-GAGAAGCGcgAGC- -5'
14300 5' -54.1 NC_003521.1 + 46104 0.69 0.919705
Target:  5'- uUGUAGCGCCGC-CUCcggacgcaGCGUUCGc -3'
miRNA:   3'- uAUAUUGCGGCGcGAGaag-----CGCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.