miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14300 5' -54.1 NC_003521.1 + 684 1.06 0.010182
Target:  5'- uAUAUAACGCCGCGCUCUUCGCGCUCGc -3'
miRNA:   3'- -UAUAUUGCGGCGCGAGAAGCGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 169774 0.88 0.1375
Target:  5'- -cAUGGCGCCGCGCUUUggGCGCUCGa -3'
miRNA:   3'- uaUAUUGCGGCGCGAGAagCGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 170678 0.75 0.668483
Target:  5'- ---aGGCaGCCGCGCUCgcCGCaGCUCGa -3'
miRNA:   3'- uauaUUG-CGGCGCGAGaaGCG-CGAGC- -5'
14300 5' -54.1 NC_003521.1 + 181859 0.74 0.718336
Target:  5'- --cUGACGgCGCGCuUCUUCGCGC-Ca -3'
miRNA:   3'- uauAUUGCgGCGCG-AGAAGCGCGaGc -5'
14300 5' -54.1 NC_003521.1 + 225825 0.72 0.792081
Target:  5'- ---gGAUGUCGCGCUUgugguccacggCGCGCUCGu -3'
miRNA:   3'- uauaUUGCGGCGCGAGaa---------GCGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 197859 0.72 0.793876
Target:  5'- ---gGGCGCCG-GCgggUCGCGCUCGc -3'
miRNA:   3'- uauaUUGCGGCgCGagaAGCGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 211180 0.72 0.811507
Target:  5'- ---aGGCGCCGCGCUCggucUCGUcCUCu -3'
miRNA:   3'- uauaUUGCGGCGCGAGa---AGCGcGAGc -5'
14300 5' -54.1 NC_003521.1 + 121131 0.72 0.820086
Target:  5'- ---gGACGCCGUggaGCUgCUgUCGUGCUCGg -3'
miRNA:   3'- uauaUUGCGGCG---CGA-GA-AGCGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 80277 0.71 0.844792
Target:  5'- aGUAUcGCGCCGCGuCUCUgucucCGCGUaCGa -3'
miRNA:   3'- -UAUAuUGCGGCGC-GAGAa----GCGCGaGC- -5'
14300 5' -54.1 NC_003521.1 + 156635 0.71 0.844792
Target:  5'- ---cGACGCCcuggGCuucCUCUUCGUGCUCGa -3'
miRNA:   3'- uauaUUGCGG----CGc--GAGAAGCGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 135613 0.71 0.860328
Target:  5'- --uUGACGCCGCGCagcUCGCGggCGg -3'
miRNA:   3'- uauAUUGCGGCGCGagaAGCGCgaGC- -5'
14300 5' -54.1 NC_003521.1 + 6267 0.7 0.875058
Target:  5'- ---cGGCGCCaCcuCUCUUCGCGCUCu -3'
miRNA:   3'- uauaUUGCGGcGc-GAGAAGCGCGAGc -5'
14300 5' -54.1 NC_003521.1 + 197703 0.7 0.875058
Target:  5'- ---cAGCGCCgaGCGCUCgccgcaGCGCUUGg -3'
miRNA:   3'- uauaUUGCGG--CGCGAGaag---CGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 105316 0.7 0.875058
Target:  5'- ---gGACGCCGCGCgacgUCGcCGCUUu -3'
miRNA:   3'- uauaUUGCGGCGCGaga-AGC-GCGAGc -5'
14300 5' -54.1 NC_003521.1 + 53972 0.7 0.875058
Target:  5'- -----uUGCCGUGgUCgugaUCGCGCUCGa -3'
miRNA:   3'- uauauuGCGGCGCgAGa---AGCGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 114306 0.7 0.875058
Target:  5'- uGUAUAACGCCGCGgaccugggCUUCugccgccugGCGCUCu -3'
miRNA:   3'- -UAUAUUGCGGCGCga------GAAG---------CGCGAGc -5'
14300 5' -54.1 NC_003521.1 + 139686 0.7 0.882106
Target:  5'- ----cGCGCCGCGCUUUcCGCGUg-- -3'
miRNA:   3'- uauauUGCGGCGCGAGAaGCGCGagc -5'
14300 5' -54.1 NC_003521.1 + 141241 0.7 0.882106
Target:  5'- ----cGCGCCGCaGUUCUUCGaccaGUUCGa -3'
miRNA:   3'- uauauUGCGGCG-CGAGAAGCg---CGAGC- -5'
14300 5' -54.1 NC_003521.1 + 225895 0.7 0.882106
Target:  5'- --cUGGCGCUGcCGC---UCGCGCUCGa -3'
miRNA:   3'- uauAUUGCGGC-GCGagaAGCGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 176864 0.7 0.882106
Target:  5'- uUAUGGCGCCGCGCcagcagCUcCaCGCUCa -3'
miRNA:   3'- uAUAUUGCGGCGCGa-----GAaGcGCGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.