miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14300 5' -54.1 NC_003521.1 + 36543 0.67 0.960495
Target:  5'- ---cAGCGCCGaGCUCUUCuuccugcuGUGCUCc -3'
miRNA:   3'- uauaUUGCGGCgCGAGAAG--------CGCGAGc -5'
14300 5' -54.1 NC_003521.1 + 46104 0.69 0.919705
Target:  5'- uUGUAGCGCCGC-CUCcggacgcaGCGUUCGc -3'
miRNA:   3'- uAUAUUGCGGCGcGAGaag-----CGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 137522 0.69 0.925164
Target:  5'- ---cAGCGCCGCGUccgCUUCcacGUGCUCu -3'
miRNA:   3'- uauaUUGCGGCGCGa--GAAG---CGCGAGc -5'
14300 5' -54.1 NC_003521.1 + 100968 0.69 0.930389
Target:  5'- ---aAGCGCCGUGCcCggCGCGCaCGg -3'
miRNA:   3'- uauaUUGCGGCGCGaGaaGCGCGaGC- -5'
14300 5' -54.1 NC_003521.1 + 223663 0.68 0.93538
Target:  5'- ---cAGCGCUGCGcCUCggccUCGCGC-CGc -3'
miRNA:   3'- uauaUUGCGGCGC-GAGa---AGCGCGaGC- -5'
14300 5' -54.1 NC_003521.1 + 88407 0.68 0.938735
Target:  5'- ---aGAgGCCGCGCUCUUgcacgaaggcgcugCGCGuCUCc -3'
miRNA:   3'- uauaUUgCGGCGCGAGAA--------------GCGC-GAGc -5'
14300 5' -54.1 NC_003521.1 + 74403 0.68 0.940138
Target:  5'- ----cACGCCGggucugGCUCUacaUCGCGCUCu -3'
miRNA:   3'- uauauUGCGGCg-----CGAGA---AGCGCGAGc -5'
14300 5' -54.1 NC_003521.1 + 55213 0.68 0.953027
Target:  5'- -----cCGCCGCGCUCcgUCgGCGUUUa -3'
miRNA:   3'- uauauuGCGGCGCGAGa-AG-CGCGAGc -5'
14300 5' -54.1 NC_003521.1 + 148596 0.68 0.954591
Target:  5'- ---cGGCGCCcgucgggcccucacaGCGCUCgUCGCGCggcCGg -3'
miRNA:   3'- uauaUUGCGG---------------CGCGAGaAGCGCGa--GC- -5'
14300 5' -54.1 NC_003521.1 + 139380 0.69 0.919705
Target:  5'- ---gAGCGCCGUGCUCUUgGCcCcgCGg -3'
miRNA:   3'- uauaUUGCGGCGCGAGAAgCGcGa-GC- -5'
14300 5' -54.1 NC_003521.1 + 225577 0.69 0.914012
Target:  5'- -cGUGuCGUCcugGCGCUCggcggccUCGCGCUCGg -3'
miRNA:   3'- uaUAUuGCGG---CGCGAGa------AGCGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 60664 0.69 0.914012
Target:  5'- -aGUGGgGCaCGaUGCUCUUCGUGCUgCGg -3'
miRNA:   3'- uaUAUUgCG-GC-GCGAGAAGCGCGA-GC- -5'
14300 5' -54.1 NC_003521.1 + 225825 0.72 0.792081
Target:  5'- ---gGAUGUCGCGCUUgugguccacggCGCGCUCGu -3'
miRNA:   3'- uauaUUGCGGCGCGAGaa---------GCGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 211180 0.72 0.811507
Target:  5'- ---aGGCGCCGCGCUCggucUCGUcCUCu -3'
miRNA:   3'- uauaUUGCGGCGCGAGa---AGCGcGAGc -5'
14300 5' -54.1 NC_003521.1 + 156635 0.71 0.844792
Target:  5'- ---cGACGCCcuggGCuucCUCUUCGUGCUCGa -3'
miRNA:   3'- uauaUUGCGG----CGc--GAGAAGCGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 114306 0.7 0.875058
Target:  5'- uGUAUAACGCCGCGgaccugggCUUCugccgccugGCGCUCu -3'
miRNA:   3'- -UAUAUUGCGGCGCga------GAAG---------CGCGAGc -5'
14300 5' -54.1 NC_003521.1 + 53972 0.7 0.875058
Target:  5'- -----uUGCCGUGgUCgugaUCGCGCUCGa -3'
miRNA:   3'- uauauuGCGGCGCgAGa---AGCGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 225895 0.7 0.882106
Target:  5'- --cUGGCGCUGcCGC---UCGCGCUCGa -3'
miRNA:   3'- uauAUUGCGGC-GCGagaAGCGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 223307 0.7 0.895547
Target:  5'- -gAUGGCGUCcucgcaGCGCUCgUCGCGCUg- -3'
miRNA:   3'- uaUAUUGCGG------CGCGAGaAGCGCGAgc -5'
14300 5' -54.1 NC_003521.1 + 12109 0.69 0.908087
Target:  5'- uGUAUAAucaugccgcCGCCGCGCUCcUUCGgGUgCGg -3'
miRNA:   3'- -UAUAUU---------GCGGCGCGAG-AAGCgCGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.