miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14300 5' -54.1 NC_003521.1 + 47921 0.68 0.958347
Target:  5'- --cUGACGgccuUCGCGCUgCUgaucgucaaccgccgUCGCGCUCGg -3'
miRNA:   3'- uauAUUGC----GGCGCGA-GA---------------AGCGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 48780 0.66 0.982183
Target:  5'- ---gGACGCCGCG-UCUgcCGCGCa-- -3'
miRNA:   3'- uauaUUGCGGCGCgAGAa-GCGCGagc -5'
14300 5' -54.1 NC_003521.1 + 53972 0.7 0.875058
Target:  5'- -----uUGCCGUGgUCgugaUCGCGCUCGa -3'
miRNA:   3'- uauauuGCGGCGCgAGa---AGCGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 55213 0.68 0.953027
Target:  5'- -----cCGCCGCGCUCcgUCgGCGUUUa -3'
miRNA:   3'- uauauuGCGGCGCGAGa-AG-CGCGAGc -5'
14300 5' -54.1 NC_003521.1 + 60664 0.69 0.914012
Target:  5'- -aGUGGgGCaCGaUGCUCUUCGUGCUgCGg -3'
miRNA:   3'- uaUAUUgCG-GC-GCGAGAAGCGCGA-GC- -5'
14300 5' -54.1 NC_003521.1 + 62535 0.7 0.888938
Target:  5'- -gAUGugGCCGaacccguccCGCUCgUUCGCGCgcgCGg -3'
miRNA:   3'- uaUAUugCGGC---------GCGAG-AAGCGCGa--GC- -5'
14300 5' -54.1 NC_003521.1 + 66171 0.68 0.953027
Target:  5'- ---gAACGCCGC-CUCUaagcuagggaaCGCGCUCa -3'
miRNA:   3'- uauaUUGCGGCGcGAGAa----------GCGCGAGc -5'
14300 5' -54.1 NC_003521.1 + 74311 0.66 0.980124
Target:  5'- ---cGAgGCCGUGCUCUUCGguCGCc-- -3'
miRNA:   3'- uauaUUgCGGCGCGAGAAGC--GCGagc -5'
14300 5' -54.1 NC_003521.1 + 74403 0.68 0.940138
Target:  5'- ----cACGCCGggucugGCUCUacaUCGCGCUCu -3'
miRNA:   3'- uauauUGCGGCg-----CGAGA---AGCGCGAGc -5'
14300 5' -54.1 NC_003521.1 + 80277 0.71 0.844792
Target:  5'- aGUAUcGCGCCGCGuCUCUgucucCGCGUaCGa -3'
miRNA:   3'- -UAUAuUGCGGCGC-GAGAa----GCGCGaGC- -5'
14300 5' -54.1 NC_003521.1 + 80386 0.67 0.963903
Target:  5'- -cGUGcCGUCGCGC-CUUCgGCGUUCu -3'
miRNA:   3'- uaUAUuGCGGCGCGaGAAG-CGCGAGc -5'
14300 5' -54.1 NC_003521.1 + 88407 0.68 0.938735
Target:  5'- ---aGAgGCCGCGCUCUUgcacgaaggcgcugCGCGuCUCc -3'
miRNA:   3'- uauaUUgCGGCGCGAGAA--------------GCGC-GAGc -5'
14300 5' -54.1 NC_003521.1 + 88956 0.66 0.982183
Target:  5'- ---gAGCGCCGCcagaacCUC-UCGCGuCUCGu -3'
miRNA:   3'- uauaUUGCGGCGc-----GAGaAGCGC-GAGC- -5'
14300 5' -54.1 NC_003521.1 + 89870 0.7 0.888264
Target:  5'- ----cGCGUCGCGCgacugcacgaugaUCUgacCGCGCUCGg -3'
miRNA:   3'- uauauUGCGGCGCG-------------AGAa--GCGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 91521 0.68 0.940138
Target:  5'- ---cGGCgGCCGCGUcg-UCGCGCUCc -3'
miRNA:   3'- uauaUUG-CGGCGCGagaAGCGCGAGc -5'
14300 5' -54.1 NC_003521.1 + 92245 0.67 0.963903
Target:  5'- ---gGGCGCCGCGCggUCUuuuggccggUCGCG-UCGa -3'
miRNA:   3'- uauaUUGCGGCGCG--AGA---------AGCGCgAGC- -5'
14300 5' -54.1 NC_003521.1 + 94668 0.66 0.977892
Target:  5'- ------gGCCcaccuCGCUCUccUCGCGCUCGc -3'
miRNA:   3'- uauauugCGGc----GCGAGA--AGCGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 100968 0.69 0.930389
Target:  5'- ---aAGCGCCGUGCcCggCGCGCaCGg -3'
miRNA:   3'- uauaUUGCGGCGCGaGaaGCGCGaGC- -5'
14300 5' -54.1 NC_003521.1 + 102945 0.69 0.930389
Target:  5'- ---aGGCGUCGCGgUCcagGCGCUCGg -3'
miRNA:   3'- uauaUUGCGGCGCgAGaagCGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 104655 0.67 0.960495
Target:  5'- ---cGACGCCGcCGcCUCUUCGgaaaacgcggaGCUCGa -3'
miRNA:   3'- uauaUUGCGGC-GC-GAGAAGCg----------CGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.