miRNA display CGI


Results 41 - 60 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 216628 0.66 0.993799
Target:  5'- --cGGUagGCGGGCGCGcCGaCGCCGGg -3'
miRNA:   3'- agaCCA--UGUUUGCGUuGCgGUGGCCg -5'
14309 5' -53 NC_003521.1 + 59930 0.66 0.993799
Target:  5'- cCUGGUcuCcGACGUgGACGCCGaucaacagcCCGGCg -3'
miRNA:   3'- aGACCAu-GuUUGCG-UUGCGGU---------GGCCG- -5'
14309 5' -53 NC_003521.1 + 62138 0.66 0.993799
Target:  5'- --cGuGUGCAAcaGCGCGAUGuucauCCACgCGGCg -3'
miRNA:   3'- agaC-CAUGUU--UGCGUUGC-----GGUG-GCCG- -5'
14309 5' -53 NC_003521.1 + 153022 0.66 0.993799
Target:  5'- -gUGGUACcuaaGGAUG-AGCGCUACgGGCc -3'
miRNA:   3'- agACCAUG----UUUGCgUUGCGGUGgCCG- -5'
14309 5' -53 NC_003521.1 + 230323 0.66 0.993799
Target:  5'- cCUGGgggGCc-ACGCcauCcCCGCCGGCg -3'
miRNA:   3'- aGACCa--UGuuUGCGuu-GcGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 54887 0.66 0.993799
Target:  5'- aUCUGGacacGCAGuggcuGCGCAcCGUuugcaggaucagCGCCGGCg -3'
miRNA:   3'- -AGACCa---UGUU-----UGCGUuGCG------------GUGGCCG- -5'
14309 5' -53 NC_003521.1 + 233047 0.66 0.993799
Target:  5'- gCUGGUGUAAG-GCu-CGUCugCGGCg -3'
miRNA:   3'- aGACCAUGUUUgCGuuGCGGugGCCG- -5'
14309 5' -53 NC_003521.1 + 234700 0.66 0.993624
Target:  5'- uUCUGGUGCuguuccugaacuaucAcaaccagauagccguGGCGgAACGCCgccgcACCGGCc -3'
miRNA:   3'- -AGACCAUG---------------U---------------UUGCgUUGCGG-----UGGCCG- -5'
14309 5' -53 NC_003521.1 + 14438 0.66 0.993535
Target:  5'- -gUGGUGCAcacggcccugcggcGGCGuCAGcCGCCGCucccgCGGCg -3'
miRNA:   3'- agACCAUGU--------------UUGC-GUU-GCGGUG-----GCCG- -5'
14309 5' -53 NC_003521.1 + 236460 0.66 0.992884
Target:  5'- --cGGgacGCGGGcCGCGAUGagcgaaCCGCCGGCg -3'
miRNA:   3'- agaCCa--UGUUU-GCGUUGC------GGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 187582 0.66 0.992884
Target:  5'- cUCUGcUGCGAcCGCuuucUGCUGCCGGUg -3'
miRNA:   3'- -AGACcAUGUUuGCGuu--GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 59820 0.66 0.992884
Target:  5'- --cGGUGC-GACGCAgugagAC-CUACCGGUa -3'
miRNA:   3'- agaCCAUGuUUGCGU-----UGcGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 43378 0.66 0.992884
Target:  5'- -----aGCAuGCGCuGGCGCCGCCuGGCc -3'
miRNA:   3'- agaccaUGUuUGCG-UUGCGGUGG-CCG- -5'
14309 5' -53 NC_003521.1 + 73213 0.66 0.992884
Target:  5'- -aUGGgACGacGACGacCAACGCCACCacgagcGGCa -3'
miRNA:   3'- agACCaUGU--UUGC--GUUGCGGUGG------CCG- -5'
14309 5' -53 NC_003521.1 + 21758 0.66 0.992884
Target:  5'- -aUGGUuccACGAAUGCAACaCCACCa-- -3'
miRNA:   3'- agACCA---UGUUUGCGUUGcGGUGGccg -5'
14309 5' -53 NC_003521.1 + 151854 0.66 0.992884
Target:  5'- --aGGUACAGGgcgcUGCAGaucaGUCGCCGGg -3'
miRNA:   3'- agaCCAUGUUU----GCGUUg---CGGUGGCCg -5'
14309 5' -53 NC_003521.1 + 5699 0.66 0.992884
Target:  5'- --gGGaACGGGCGC--CGUCACCGGg -3'
miRNA:   3'- agaCCaUGUUUGCGuuGCGGUGGCCg -5'
14309 5' -53 NC_003521.1 + 74011 0.66 0.992884
Target:  5'- cCUGGUACu-GCGCGagcucuaccgccGCGUCACCu-- -3'
miRNA:   3'- aGACCAUGuuUGCGU------------UGCGGUGGccg -5'
14309 5' -53 NC_003521.1 + 38121 0.66 0.992884
Target:  5'- cUUUGGUGCcguacccacUGCAGCuuUACCGGCg -3'
miRNA:   3'- -AGACCAUGuuu------GCGUUGcgGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 32376 0.66 0.992884
Target:  5'- uUUUGGUG---GCGCGugGCCAgguccuCgGGCg -3'
miRNA:   3'- -AGACCAUguuUGCGUugCGGU------GgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.