Results 21 - 40 of 560 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14309 | 5' | -53 | NC_003521.1 | + | 119029 | 0.66 | 0.994618 |
Target: 5'- --cGGc-CGAGCGCAAguacCGCCACCuGCc -3' miRNA: 3'- agaCCauGUUUGCGUU----GCGGUGGcCG- -5' |
|||||||
14309 | 5' | -53 | NC_003521.1 | + | 45806 | 0.66 | 0.994618 |
Target: 5'- uUCUaGGgGgAGGCG-AAgGCCACUGGCa -3' miRNA: 3'- -AGA-CCaUgUUUGCgUUgCGGUGGCCG- -5' |
|||||||
14309 | 5' | -53 | NC_003521.1 | + | 87264 | 0.66 | 0.994618 |
Target: 5'- gCU-GUGCGccguGCGCGugGCCaACgGGCc -3' miRNA: 3'- aGAcCAUGUu---UGCGUugCGG-UGgCCG- -5' |
|||||||
14309 | 5' | -53 | NC_003521.1 | + | 225537 | 0.66 | 0.994618 |
Target: 5'- gUCg---ACGAACGCu-CGUCACCaGGCa -3' miRNA: 3'- -AGaccaUGUUUGCGuuGCGGUGG-CCG- -5' |
|||||||
14309 | 5' | -53 | NC_003521.1 | + | 103773 | 0.66 | 0.994618 |
Target: 5'- --gGGgcCGGGCGguGCcugagucaGCCGCCGGUu -3' miRNA: 3'- agaCCauGUUUGCguUG--------CGGUGGCCG- -5' |
|||||||
14309 | 5' | -53 | NC_003521.1 | + | 126965 | 0.66 | 0.994618 |
Target: 5'- --cGGaACccGCGCcguCGUCGCCGGCc -3' miRNA: 3'- agaCCaUGuuUGCGuu-GCGGUGGCCG- -5' |
|||||||
14309 | 5' | -53 | NC_003521.1 | + | 131858 | 0.66 | 0.99454 |
Target: 5'- cCUGGaggugACcGACGUggucauaGACGCCACCGa- -3' miRNA: 3'- aGACCa----UGuUUGCG-------UUGCGGUGGCcg -5' |
|||||||
14309 | 5' | -53 | NC_003521.1 | + | 94913 | 0.66 | 0.99454 |
Target: 5'- --aGGccguuUGCGAACcgccgcuGCuccCGCCGCCGGCg -3' miRNA: 3'- agaCC-----AUGUUUG-------CGuu-GCGGUGGCCG- -5' |
|||||||
14309 | 5' | -53 | NC_003521.1 | + | 212363 | 0.66 | 0.994382 |
Target: 5'- gCUGGUGCAccgcccaaggcuggAugGCGACgaagaGCCACagcagCGGUa -3' miRNA: 3'- aGACCAUGU--------------UugCGUUG-----CGGUG-----GCCG- -5' |
|||||||
14309 | 5' | -53 | NC_003521.1 | + | 126395 | 0.66 | 0.993799 |
Target: 5'- gUCUGGUgccgccACAGgucucggcccuGCGCgAugGCgGCCaGGCg -3' miRNA: 3'- -AGACCA------UGUU-----------UGCG-UugCGgUGG-CCG- -5' |
|||||||
14309 | 5' | -53 | NC_003521.1 | + | 63924 | 0.66 | 0.993799 |
Target: 5'- gCUGGaGCugcaGCAggACGUCaACCGGCu -3' miRNA: 3'- aGACCaUGuuugCGU--UGCGG-UGGCCG- -5' |
|||||||
14309 | 5' | -53 | NC_003521.1 | + | 223684 | 0.66 | 0.993799 |
Target: 5'- --gGGU-CGGGCGaAGCG-CGCCGGCa -3' miRNA: 3'- agaCCAuGUUUGCgUUGCgGUGGCCG- -5' |
|||||||
14309 | 5' | -53 | NC_003521.1 | + | 105312 | 0.66 | 0.993799 |
Target: 5'- -gUGGggACGccGCGCGACGUCGCC-GCu -3' miRNA: 3'- agACCa-UGUu-UGCGUUGCGGUGGcCG- -5' |
|||||||
14309 | 5' | -53 | NC_003521.1 | + | 98398 | 0.66 | 0.993799 |
Target: 5'- gCUGGUGCcGACGCugGugGUgaCGuuGGCc -3' miRNA: 3'- aGACCAUGuUUGCG--UugCG--GUggCCG- -5' |
|||||||
14309 | 5' | -53 | NC_003521.1 | + | 59930 | 0.66 | 0.993799 |
Target: 5'- cCUGGUcuCcGACGUgGACGCCGaucaacagcCCGGCg -3' miRNA: 3'- aGACCAu-GuUUGCG-UUGCGGU---------GGCCG- -5' |
|||||||
14309 | 5' | -53 | NC_003521.1 | + | 137162 | 0.66 | 0.993799 |
Target: 5'- -aUGGccGCGGcCGCAGCggccGCCGCCGaGCu -3' miRNA: 3'- agACCa-UGUUuGCGUUG----CGGUGGC-CG- -5' |
|||||||
14309 | 5' | -53 | NC_003521.1 | + | 207514 | 0.66 | 0.993799 |
Target: 5'- cCUGGUuCAAGCaCAcCuUCGCCGGCa -3' miRNA: 3'- aGACCAuGUUUGcGUuGcGGUGGCCG- -5' |
|||||||
14309 | 5' | -53 | NC_003521.1 | + | 115724 | 0.66 | 0.993799 |
Target: 5'- -gUGGUGCccauccCGCAGCGCCugCa-- -3' miRNA: 3'- agACCAUGuuu---GCGUUGCGGugGccg -5' |
|||||||
14309 | 5' | -53 | NC_003521.1 | + | 62138 | 0.66 | 0.993799 |
Target: 5'- --cGuGUGCAAcaGCGCGAUGuucauCCACgCGGCg -3' miRNA: 3'- agaC-CAUGUU--UGCGUUGC-----GGUG-GCCG- -5' |
|||||||
14309 | 5' | -53 | NC_003521.1 | + | 153022 | 0.66 | 0.993799 |
Target: 5'- -gUGGUACcuaaGGAUG-AGCGCUACgGGCc -3' miRNA: 3'- agACCAUG----UUUGCgUUGCGGUGgCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home