miRNA display CGI


Results 21 - 40 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 87264 0.66 0.994618
Target:  5'- gCU-GUGCGccguGCGCGugGCCaACgGGCc -3'
miRNA:   3'- aGAcCAUGUu---UGCGUugCGG-UGgCCG- -5'
14309 5' -53 NC_003521.1 + 239495 0.66 0.994618
Target:  5'- --cGGUugGAccgauACaGCcGCGCCacucGCCGGCg -3'
miRNA:   3'- agaCCAugUU-----UG-CGuUGCGG----UGGCCG- -5'
14309 5' -53 NC_003521.1 + 96891 0.66 0.994618
Target:  5'- --cGGUGCGAGCaguuggggauGCGGCGC-GCCGuGCc -3'
miRNA:   3'- agaCCAUGUUUG----------CGUUGCGgUGGC-CG- -5'
14309 5' -53 NC_003521.1 + 232816 0.66 0.994618
Target:  5'- gUCUGGaGCuacGGCGC--UGCC-CCGGUa -3'
miRNA:   3'- -AGACCaUGu--UUGCGuuGCGGuGGCCG- -5'
14309 5' -53 NC_003521.1 + 141836 0.66 0.994618
Target:  5'- --cGGUACcuccccuGACGCcuccuaaaGGCGCCGCCGucGCu -3'
miRNA:   3'- agaCCAUGu------UUGCG--------UUGCGGUGGC--CG- -5'
14309 5' -53 NC_003521.1 + 45806 0.66 0.994618
Target:  5'- uUCUaGGgGgAGGCG-AAgGCCACUGGCa -3'
miRNA:   3'- -AGA-CCaUgUUUGCgUUgCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 131858 0.66 0.99454
Target:  5'- cCUGGaggugACcGACGUggucauaGACGCCACCGa- -3'
miRNA:   3'- aGACCa----UGuUUGCG-------UUGCGGUGGCcg -5'
14309 5' -53 NC_003521.1 + 94913 0.66 0.99454
Target:  5'- --aGGccguuUGCGAACcgccgcuGCuccCGCCGCCGGCg -3'
miRNA:   3'- agaCC-----AUGUUUG-------CGuu-GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 212363 0.66 0.994382
Target:  5'- gCUGGUGCAccgcccaaggcuggAugGCGACgaagaGCCACagcagCGGUa -3'
miRNA:   3'- aGACCAUGU--------------UugCGUUG-----CGGUG-----GCCG- -5'
14309 5' -53 NC_003521.1 + 137162 0.66 0.993799
Target:  5'- -aUGGccGCGGcCGCAGCggccGCCGCCGaGCu -3'
miRNA:   3'- agACCa-UGUUuGCGUUG----CGGUGGC-CG- -5'
14309 5' -53 NC_003521.1 + 63924 0.66 0.993799
Target:  5'- gCUGGaGCugcaGCAggACGUCaACCGGCu -3'
miRNA:   3'- aGACCaUGuuugCGU--UGCGG-UGGCCG- -5'
14309 5' -53 NC_003521.1 + 207514 0.66 0.993799
Target:  5'- cCUGGUuCAAGCaCAcCuUCGCCGGCa -3'
miRNA:   3'- aGACCAuGUUUGcGUuGcGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 98398 0.66 0.993799
Target:  5'- gCUGGUGCcGACGCugGugGUgaCGuuGGCc -3'
miRNA:   3'- aGACCAUGuUUGCG--UugCG--GUggCCG- -5'
14309 5' -53 NC_003521.1 + 223684 0.66 0.993799
Target:  5'- --gGGU-CGGGCGaAGCG-CGCCGGCa -3'
miRNA:   3'- agaCCAuGUUUGCgUUGCgGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 153022 0.66 0.993799
Target:  5'- -gUGGUACcuaaGGAUG-AGCGCUACgGGCc -3'
miRNA:   3'- agACCAUG----UUUGCgUUGCGGUGgCCG- -5'
14309 5' -53 NC_003521.1 + 62138 0.66 0.993799
Target:  5'- --cGuGUGCAAcaGCGCGAUGuucauCCACgCGGCg -3'
miRNA:   3'- agaC-CAUGUU--UGCGUUGC-----GGUG-GCCG- -5'
14309 5' -53 NC_003521.1 + 126395 0.66 0.993799
Target:  5'- gUCUGGUgccgccACAGgucucggcccuGCGCgAugGCgGCCaGGCg -3'
miRNA:   3'- -AGACCA------UGUU-----------UGCG-UugCGgUGG-CCG- -5'
14309 5' -53 NC_003521.1 + 115724 0.66 0.993799
Target:  5'- -gUGGUGCccauccCGCAGCGCCugCa-- -3'
miRNA:   3'- agACCAUGuuu---GCGUUGCGGugGccg -5'
14309 5' -53 NC_003521.1 + 59930 0.66 0.993799
Target:  5'- cCUGGUcuCcGACGUgGACGCCGaucaacagcCCGGCg -3'
miRNA:   3'- aGACCAu-GuUUGCG-UUGCGGU---------GGCCG- -5'
14309 5' -53 NC_003521.1 + 74173 0.66 0.993799
Target:  5'- gCUGGccgACu-GCGCcGCGgCGCCcGGCg -3'
miRNA:   3'- aGACCa--UGuuUGCGuUGCgGUGG-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.