Results 21 - 40 of 560 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14309 | 5' | -53 | NC_003521.1 | + | 133003 | 0.78 | 0.593542 |
Target: 5'- --gGGUugGGACGgggaCAGcCGCCACCGGCa -3' miRNA: 3'- agaCCAugUUUGC----GUU-GCGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 36719 | 0.78 | 0.593542 |
Target: 5'- --aGGUGgAGGCGCAgugGCGCCACCaGGUg -3' miRNA: 3'- agaCCAUgUUUGCGU---UGCGGUGG-CCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 203326 | 0.77 | 0.602601 |
Target: 5'- aUCUGGUACAgcGugGCGAUGggggugcCCugCGGCa -3' miRNA: 3'- -AGACCAUGU--UugCGUUGC-------GGugGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 236138 | 0.77 | 0.613696 |
Target: 5'- --cGGgACGGgggggaccGCGCGACGUCGCCGGCg -3' miRNA: 3'- agaCCaUGUU--------UGCGUUGCGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 25821 | 0.77 | 0.623797 |
Target: 5'- --cGGUGCGuuACGaGACGCCGCUGGCu -3' miRNA: 3'- agaCCAUGUu-UGCgUUGCGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 145860 | 0.77 | 0.633904 |
Target: 5'- cUCUGGgcccgGCGgcgggcggcgccGACGaCGAgGCCGCCGGCg -3' miRNA: 3'- -AGACCa----UGU------------UUGC-GUUgCGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 138020 | 0.77 | 0.64401 |
Target: 5'- --aGGUGCGcgUGCGuCGCUGCCGGCg -3' miRNA: 3'- agaCCAUGUuuGCGUuGCGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 1438 | 0.77 | 0.64401 |
Target: 5'- aCUGGgccGCGAGCu--GCGCCGCCGGUg -3' miRNA: 3'- aGACCa--UGUUUGcguUGCGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 201665 | 0.77 | 0.64401 |
Target: 5'- aCUGGgccGCGAGCu--GCGCCGCCGGUg -3' miRNA: 3'- aGACCa--UGUUUGcguUGCGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 137389 | 0.77 | 0.64805 |
Target: 5'- aCUGGUGCAGACGCgcgucgacaucAaccccgaccucauguACGCCACCaGCg -3' miRNA: 3'- aGACCAUGUUUGCG-----------U---------------UGCGGUGGcCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 108215 | 0.76 | 0.653097 |
Target: 5'- gUCUGGaagccguUGCGGACGcCGACGCCGCC-GCu -3' miRNA: 3'- -AGACC-------AUGUUUGC-GUUGCGGUGGcCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 42955 | 0.76 | 0.654106 |
Target: 5'- cCUGcagcccaGCGAGCGCGAC-CCGCCGGCg -3' miRNA: 3'- aGACca-----UGUUUGCGUUGcGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 31422 | 0.76 | 0.664186 |
Target: 5'- gCUGGcgUGCAGcaggcggaugauGCGCAGCGCCAgcaCGGCg -3' miRNA: 3'- aGACC--AUGUU------------UGCGUUGCGGUg--GCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 165270 | 0.76 | 0.67424 |
Target: 5'- --gGGcGCuGGCGUAGcCGCCGCCGGCg -3' miRNA: 3'- agaCCaUGuUUGCGUU-GCGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 210575 | 0.76 | 0.678253 |
Target: 5'- gCUGGccacgGCAAccgcgcggaccugcaGCGCGACGCCaacgGCCGGCc -3' miRNA: 3'- aGACCa----UGUU---------------UGCGUUGCGG----UGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 87997 | 0.76 | 0.691251 |
Target: 5'- aUCUGGggGC--GCGCGACGCCgagcuguaccaccuGCCGGUg -3' miRNA: 3'- -AGACCa-UGuuUGCGUUGCGG--------------UGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 143515 | 0.76 | 0.693243 |
Target: 5'- gUCUGGauguCGGGCcugauccGCAcgcGCGCCGCCGGCg -3' miRNA: 3'- -AGACCau--GUUUG-------CGU---UGCGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 97745 | 0.76 | 0.694239 |
Target: 5'- --cGGcUGCGAauccgACGUAuCGCCACCGGCg -3' miRNA: 3'- agaCC-AUGUU-----UGCGUuGCGGUGGCCG- -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 61735 | 0.76 | 0.698217 |
Target: 5'- aCUGGUACAGgaggcGCGCAGuuuucagccguucccCGUCACCGGg -3' miRNA: 3'- aGACCAUGUU-----UGCGUU---------------GCGGUGGCCg -5' |
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14309 | 5' | -53 | NC_003521.1 | + | 161609 | 0.75 | 0.713052 |
Target: 5'- aUCUGGUGCccucgggcAACGUgcugcguuucuucGGCGCCACCGaGCa -3' miRNA: 3'- -AGACCAUGu-------UUGCG-------------UUGCGGUGGC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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